Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1944

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
2,216,195	-		Psyr_1943	0.24	-1.4
2,216,338	+		Psyr_1943	0.51	-0.3
2,216,338	+		Psyr_1943	0.51	+2.5
2,216,338	+		Psyr_1943	0.51	-0.0
2,216,339	-		Psyr_1943	0.51	+0.0
2,216,339	-		Psyr_1943	0.51	+0.5
2,216,404	+		Psyr_1943	0.63	+0.5
2,216,405	-		Psyr_1943	0.64	+0.6
2,216,405	-		Psyr_1943	0.64	+1.5
2,216,536	+		Psyr_1943	0.88	+0.5
2,216,536	+		Psyr_1943	0.88	-1.9
2,216,536	+		Psyr_1943	0.88	-2.6
2,216,536	+		Psyr_1943	0.88	-0.9
2,216,536	+		Psyr_1943	0.88	+0.4
2,216,537	-		Psyr_1943	0.88	-1.0
2,216,537	-		Psyr_1943	0.88	+0.4
2,216,537	-		Psyr_1943	0.88	+1.0
2,216,537	-		Psyr_1943	0.88	-0.0
2,216,576	+				-1.0
2,216,577	-				-0.9
2,216,577	-				-0.1
2,216,577	-				+0.5
2,216,586	+				-0.5
2,216,587	-				+0.3
2,216,620	+				-0.1
2,216,727	+				+0.3
2,216,773	+				-2.5
2,216,774	-				-1.5
2,216,777	+				-0.2
2,216,778	-				-0.9
2,216,838	+				+0.4
2,216,839	-				-0.0
2,216,885	+				-1.2
2,216,886	-				-1.2
2,216,886	-				-0.5
2,216,956	+				-0.4
2,216,980	+				-0.5
2,216,980	+				-0.2
2,216,980	+				+0.1
2,216,981	-				+1.5
2,216,981	-				+1.1
2,216,981	-				-0.2
2,217,137	-		Psyr_1944	0.29	+0.8
2,217,421	+		Psyr_1944	0.66	+0.5
2,217,458	+		Psyr_1944	0.71	-0.5
2,217,459	-		Psyr_1944	0.71	+2.4
2,217,459	-		Psyr_1944	0.71	+0.1
2,217,459	-		Psyr_1944	0.71	-0.5
2,217,563	-		Psyr_1944	0.85	+1.7
2,217,737	+				-0.5
2,217,738	-				-0.4
2,217,997	-				+0.4
2,217,997	-				-0.2
2,218,023	+				+1.6
2,218,024	-				-1.3
2,218,024	-				+0.5
2,218,284	+				+2.4
2,218,285	-				+0.5
2,218,285	-				-0.0
2,218,422	+				+0.2
2,218,423	-				-1.4
2,218,501	-				-1.8