Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1910

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
2,183,968	+				+1.0
2,183,968	+				-0.0
2,183,968	+				+0.5
2,183,969	-				-1.8
2,183,969	-				+0.3
2,183,969	-				+2.6
2,183,999	+				-0.8
2,183,999	+				-0.2
2,184,000	-				+0.3
2,184,023	+				-0.1
2,184,024	-				+0.8
2,184,024	-				-0.2
2,184,051	+				-0.2
2,184,052	-				-2.3
2,184,052	-				-0.4
2,184,052	-				-0.7
2,184,052	-				-1.3
2,184,052	-				+0.7
2,184,052	-				+0.6
2,184,317	+		Psyr_1909	0.43	+0.7
2,184,767	+				+0.2
2,184,786	+				+1.9
2,184,786	+				+0.2
2,184,787	-				+0.3
2,184,787	-				-0.8
2,184,788	+				+1.1
2,184,788	+				-0.9
2,184,788	+				-2.5
2,184,789	-				-3.0
2,184,789	-				-0.6
2,184,789	-				-1.0
2,184,789	-				+1.1
2,184,800	+				+0.6
2,184,829	+				-0.9
2,184,859	+				-1.8
2,184,859	+				+0.0
2,184,860	-				+0.9
2,184,860	-				+0.6
2,185,017	-		Psyr_1910	0.22	-1.2
2,185,017	-		Psyr_1910	0.22	-0.8
2,185,044	-		Psyr_1910	0.26	+0.1
2,185,049	+		Psyr_1910	0.27	+0.6
2,185,049	+		Psyr_1910	0.27	+1.1
2,185,049	+		Psyr_1910	0.27	-1.0
2,185,049	+		Psyr_1910	0.27	+0.6
2,185,049	+		Psyr_1910	0.27	-0.6
2,185,050	-		Psyr_1910	0.27	-2.2
2,185,050	-		Psyr_1910	0.27	+2.1
2,185,050	-		Psyr_1910	0.27	-2.2
2,185,050	-		Psyr_1910	0.27	-0.8
2,185,050	-		Psyr_1910	0.27	+0.6
2,185,050	-		Psyr_1910	0.27	-0.7
2,185,332	+		Psyr_1910	0.67	-1.1
2,185,332	+		Psyr_1910	0.67	-0.8
2,185,332	+		Psyr_1910	0.67	-1.3
2,185,332	+		Psyr_1910	0.67	-1.3
2,185,332	+		Psyr_1910	0.67	-0.8
2,185,333	-		Psyr_1910	0.67	-2.0
2,185,333	-		Psyr_1910	0.67	-1.0
2,185,364	+		Psyr_1910	0.72	+0.1
2,185,365	-		Psyr_1910	0.72	-1.4
2,185,484	+		Psyr_1910	0.89	-1.0
2,185,506	-				-1.6
2,185,567	-				-1.1
2,185,612	+				-1.2
2,185,613	-				+0.6
2,185,616	-				+2.1
2,185,909	+		Psyr_1911	0.86	+0.4
2,185,909	+		Psyr_1911	0.86	+0.4
2,185,909	+		Psyr_1911	0.86	+1.9
2,185,909	+		Psyr_1911	0.86	+0.5
2,185,909	+		Psyr_1911	0.86	+1.0
2,185,910	-		Psyr_1911	0.87	-0.1
2,185,910	-		Psyr_1911	0.87	-1.9
2,185,951	+				+0.7
2,185,951	+				+0.3
2,185,952	-				-1.8
2,185,966	+				+2.9
2,185,966	+				+0.7
2,185,990	+				-0.9
2,185,990	+				+0.4
2,186,012	+				+0.0
2,186,013	-				-1.4
2,186,109	+				-2.4
2,186,109	+				-0.7