Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1816

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
2,090,703	+		Psyr_1815	0.56	+1.4
2,090,704	-		Psyr_1815	0.56	+0.5
2,090,878	+		Psyr_1815	0.68	-0.1
2,091,264	+				+0.2
2,091,264	+				+0.5
2,091,264	+				-0.6
2,091,265	-				+0.1
2,091,265	-				+1.1
2,091,308	+				-0.1
2,091,385	-				-0.1
2,091,567	+				-0.1
2,091,567	+				+0.1
2,091,567	+				-0.9
2,091,568	-				-1.0
2,091,769	+		Psyr_1816	0.23	-1.1
2,091,854	+		Psyr_1816	0.36	-2.3
2,091,882	+		Psyr_1816	0.40	-2.1
2,091,882	+		Psyr_1816	0.40	+0.6
2,091,882	+		Psyr_1816	0.40	-1.9
2,091,883	-		Psyr_1816	0.41	-1.7
2,091,952	+		Psyr_1816	0.51	-1.0
2,091,952	+		Psyr_1816	0.51	-0.4
2,092,104	+		Psyr_1816	0.74	+0.0
2,092,104	+		Psyr_1816	0.74	+0.6
2,092,105	-		Psyr_1816	0.74	-2.2
2,092,105	-		Psyr_1816	0.74	-1.9
2,092,146	+		Psyr_1816	0.80	-1.3
2,092,193	+		Psyr_1816	0.88	-0.0
2,092,224	+				+0.9
2,092,225	-				+0.9
2,092,621	+				-0.4
2,092,621	+				+0.0
2,092,621	+				+1.4
2,092,622	-				+1.6
2,092,622	-				+0.2
2,092,624	+				+0.3
2,092,625	-				+0.1
2,092,625	-				-0.2
2,092,625	-				+0.4
2,092,699	+		Psyr_1817	0.12	-0.5
2,092,699	+		Psyr_1817	0.12	+0.8
2,092,700	-		Psyr_1817	0.12	+1.2
2,092,700	-		Psyr_1817	0.12	-0.7
2,092,795	+		Psyr_1817	0.15	+1.2
2,092,795	+		Psyr_1817	0.15	-1.0
2,092,931	-		Psyr_1817	0.19	-0.1
2,092,939	+		Psyr_1817	0.19	+0.0
2,092,939	+		Psyr_1817	0.19	+0.4
2,092,940	-		Psyr_1817	0.19	-0.3
2,092,940	-		Psyr_1817	0.19	-0.1
2,092,940	-		Psyr_1817	0.19	+0.4
2,092,940	-		Psyr_1817	0.19	+0.8