Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1707

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1706 and Psyr_1707 are separated by 19 nucleotidesPsyr_1707 and Psyr_1708 are separated by 95 nucleotides Psyr_1706: Psyr_1706 - General substrate transporter:Major facilitator superfamily, at 1,930,813 to 1,932,048 _1706 Psyr_1707: Psyr_1707 - transcriptional regulator, GntR family, at 1,932,068 to 1,932,781 _1707 Psyr_1708: Psyr_1708 - L-arabinonate dehydratase, at 1,932,877 to 1,934,619 _1708 Position (kb) 1932 1933Strain fitness (log2 ratio) -2 -1 0 1 2at 1931.142 kb on - strand, within Psyr_1706at 1931.194 kb on + strand, within Psyr_1706at 1931.194 kb on + strand, within Psyr_1706at 1931.194 kb on + strand, within Psyr_1706at 1931.194 kb on + strand, within Psyr_1706at 1931.194 kb on + strand, within Psyr_1706at 1931.194 kb on + strand, within Psyr_1706at 1931.195 kb on - strand, within Psyr_1706at 1931.195 kb on - strand, within Psyr_1706at 1931.195 kb on - strand, within Psyr_1706at 1931.195 kb on - strand, within Psyr_1706at 1931.195 kb on - strand, within Psyr_1706at 1931.196 kb on + strand, within Psyr_1706at 1931.197 kb on - strand, within Psyr_1706at 1931.365 kb on + strand, within Psyr_1706at 1931.366 kb on - strand, within Psyr_1706at 1931.372 kb on - strand, within Psyr_1706at 1931.372 kb on - strand, within Psyr_1706at 1931.372 kb on - strand, within Psyr_1706at 1931.372 kb on - strand, within Psyr_1706at 1931.486 kb on - strand, within Psyr_1706at 1931.486 kb on - strand, within Psyr_1706at 1931.590 kb on + strand, within Psyr_1706at 1931.591 kb on - strand, within Psyr_1706at 1931.637 kb on - strand, within Psyr_1706at 1931.643 kb on - strand, within Psyr_1706at 1931.713 kb on + strand, within Psyr_1706at 1931.722 kb on + strand, within Psyr_1706at 1931.723 kb on - strand, within Psyr_1706at 1931.915 kb on + strand, within Psyr_1706at 1931.915 kb on + strand, within Psyr_1706at 1931.989 kb on + strandat 1931.989 kb on + strandat 1931.989 kb on + strandat 1931.989 kb on + strandat 1931.989 kb on + strandat 1931.990 kb on - strandat 1931.990 kb on - strandat 1932.040 kb on - strandat 1932.229 kb on - strand, within Psyr_1707at 1932.375 kb on + strand, within Psyr_1707at 1932.459 kb on - strand, within Psyr_1707at 1932.518 kb on + strand, within Psyr_1707at 1932.518 kb on + strand, within Psyr_1707at 1932.519 kb on - strand, within Psyr_1707at 1932.649 kb on - strand, within Psyr_1707at 1932.649 kb on - strand, within Psyr_1707at 1932.649 kb on - strand, within Psyr_1707at 1932.649 kb on - strand, within Psyr_1707at 1932.649 kb on - strand, within Psyr_1707at 1932.737 kb on - strandat 1932.737 kb on - strandat 1932.822 kb on + strandat 1932.822 kb on + strandat 1932.822 kb on + strandat 1932.823 kb on - strandat 1932.823 kb on - strandat 1932.823 kb on - strandat 1932.823 kb on - strandat 1932.964 kb on + strandat 1932.964 kb on + strandat 1932.964 kb on + strandat 1932.964 kb on + strandat 1932.965 kb on - strandat 1932.968 kb on + strandat 1932.969 kb on - strandat 1933.355 kb on + strand, within Psyr_1708at 1933.356 kb on - strand, within Psyr_1708at 1933.356 kb on - strand, within Psyr_1708at 1933.356 kb on - strand, within Psyr_1708at 1933.356 kb on - strand, within Psyr_1708at 1933.356 kb on - strand, within Psyr_1708at 1933.529 kb on + strand, within Psyr_1708at 1933.529 kb on + strand, within Psyr_1708at 1933.529 kb on + strand, within Psyr_1708at 1933.530 kb on - strand, within Psyr_1708at 1933.530 kb on - strand, within Psyr_1708at 1933.652 kb on + strand, within Psyr_1708at 1933.652 kb on + strand, within Psyr_1708at 1933.653 kb on - strand, within Psyr_1708at 1933.653 kb on - strandat 1933.653 kb on - strand, within Psyr_1708at 1933.653 kb on - strand, within Psyr_1708at 1933.653 kb on - strand, within Psyr_1708

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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1,931,142 - Psyr_1706 0.27 -0.7
1,931,194 + Psyr_1706 0.31 -0.4
1,931,194 + Psyr_1706 0.31 +0.3
1,931,194 + Psyr_1706 0.31 +1.2
1,931,194 + Psyr_1706 0.31 +0.1
1,931,194 + Psyr_1706 0.31 +1.0
1,931,194 + Psyr_1706 0.31 -0.5
1,931,195 - Psyr_1706 0.31 +0.0
1,931,195 - Psyr_1706 0.31 -1.3
1,931,195 - Psyr_1706 0.31 +0.6
1,931,195 - Psyr_1706 0.31 -0.1
1,931,195 - Psyr_1706 0.31 -1.0
1,931,196 + Psyr_1706 0.31 -1.0
1,931,197 - Psyr_1706 0.31 -0.4
1,931,365 + Psyr_1706 0.45 +1.2
1,931,366 - Psyr_1706 0.45 -0.3
1,931,372 - Psyr_1706 0.45 +0.6
1,931,372 - Psyr_1706 0.45 +0.5
1,931,372 - Psyr_1706 0.45 -0.5
1,931,372 - Psyr_1706 0.45 -0.7
1,931,486 - Psyr_1706 0.54 -0.4
1,931,486 - Psyr_1706 0.54 -0.2
1,931,590 + Psyr_1706 0.63 +0.9
1,931,591 - Psyr_1706 0.63 -0.7
1,931,637 - Psyr_1706 0.67 -0.5
1,931,643 - Psyr_1706 0.67 +0.6
1,931,713 + Psyr_1706 0.73 +0.3
1,931,722 + Psyr_1706 0.74 +0.5
1,931,723 - Psyr_1706 0.74 +0.6
1,931,915 + Psyr_1706 0.89 -0.4
1,931,915 + Psyr_1706 0.89 -0.9
1,931,989 + +1.2
1,931,989 + -1.0
1,931,989 + -0.6
1,931,989 + +0.3
1,931,989 + +1.8
1,931,990 - +1.1
1,931,990 - -1.5
1,932,040 - +0.3
1,932,229 - Psyr_1707 0.23 -0.2
1,932,375 + Psyr_1707 0.43 -1.1
1,932,459 - Psyr_1707 0.55 -0.4
1,932,518 + Psyr_1707 0.63 -0.6
1,932,518 + Psyr_1707 0.63 -0.9
1,932,519 - Psyr_1707 0.63 -1.2
1,932,649 - Psyr_1707 0.81 +0.4
1,932,649 - Psyr_1707 0.81 -1.1
1,932,649 - Psyr_1707 0.81 -0.5
1,932,649 - Psyr_1707 0.81 -0.2
1,932,649 - Psyr_1707 0.81 -0.1
1,932,737 - -0.2
1,932,737 - -1.0
1,932,822 + -1.3
1,932,822 + +0.6
1,932,822 + -1.5
1,932,823 - +0.6
1,932,823 - +1.0
1,932,823 - -0.2
1,932,823 - -1.9
1,932,964 + -0.4
1,932,964 + +0.2
1,932,964 + +1.6
1,932,964 + +1.1
1,932,965 - +1.6
1,932,968 + +0.5
1,932,969 - +2.0
1,933,355 + Psyr_1708 0.27 +0.1
1,933,356 - Psyr_1708 0.27 -0.9
1,933,356 - Psyr_1708 0.27 +0.6
1,933,356 - Psyr_1708 0.27 -1.2
1,933,356 - Psyr_1708 0.27 +0.9
1,933,356 - Psyr_1708 0.27 -0.3
1,933,529 + Psyr_1708 0.37 -2.4
1,933,529 + Psyr_1708 0.37 -0.3
1,933,529 + Psyr_1708 0.37 -0.2
1,933,530 - Psyr_1708 0.37 -0.2
1,933,530 - Psyr_1708 0.37 -0.1
1,933,652 + Psyr_1708 0.44 +2.0
1,933,652 + Psyr_1708 0.44 +0.5
1,933,653 - Psyr_1708 0.45 -0.2
1,933,653 - +2.2
1,933,653 - Psyr_1708 0.45 -0.4
1,933,653 - Psyr_1708 0.45 -0.4
1,933,653 - Psyr_1708 0.45 +2.6

Or see this region's nucleotide sequence