Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1694

Experiment: KB with capsaicin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1692 and Psyr_1693 are separated by 26 nucleotidesPsyr_1693 and Psyr_1694 are separated by 30 nucleotidesPsyr_1694 and Psyr_1695 are separated by 84 nucleotidesPsyr_1695 and Psyr_1696 are separated by 13 nucleotides Psyr_1692: Psyr_1692 - conserved hypothetical protein, at 1,900,845 to 1,901,498 _1692 Psyr_1693: Psyr_1693 - PspA/IM30, at 1,901,525 to 1,902,232 _1693 Psyr_1694: Psyr_1694 - Rhomboid-like protein, at 1,902,263 to 1,902,817 _1694 Psyr_1695: Psyr_1695 - conserved hypothetical protein, at 1,902,902 to 1,903,567 _1695 Psyr_1696: Psyr_1696 - Protein of unknown function DUF350, at 1,903,581 to 1,904,006 _1696 Position (kb) 1902 1903Strain fitness (log2 ratio) -2 -1 0 1 2at 1901.494 kb on - strandat 1901.494 kb on - strandat 1901.530 kb on + strandat 1901.530 kb on + strandat 1901.530 kb on + strandat 1901.530 kb on + strandat 1901.530 kb on + strandat 1901.530 kb on + strandat 1901.530 kb on - strandat 1901.531 kb on - strandat 1901.531 kb on - strandat 1901.531 kb on - strandat 1901.536 kb on + strandat 1901.536 kb on + strandat 1901.536 kb on + strandat 1901.537 kb on - strandat 1901.799 kb on + strand, within Psyr_1693at 1901.995 kb on + strand, within Psyr_1693at 1902.190 kb on - strandat 1902.190 kb on - strandat 1902.190 kb on - strandat 1902.574 kb on + strand, within Psyr_1694at 1902.575 kb on - strand, within Psyr_1694at 1902.575 kb on - strand, within Psyr_1694at 1902.575 kb on - strand, within Psyr_1694at 1902.617 kb on + strand, within Psyr_1694at 1902.638 kb on + strand, within Psyr_1694at 1902.866 kb on + strandat 1902.866 kb on + strandat 1902.866 kb on + strandat 1902.866 kb on + strandat 1902.866 kb on + strandat 1902.866 kb on + strandat 1902.867 kb on - strandat 1902.867 kb on - strandat 1902.867 kb on - strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.868 kb on + strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.869 kb on - strandat 1902.871 kb on - strandat 1902.871 kb on - strandat 1902.871 kb on - strandat 1902.871 kb on - strandat 1903.140 kb on - strand, within Psyr_1695at 1903.157 kb on + strand, within Psyr_1695at 1903.157 kb on + strand, within Psyr_1695at 1903.157 kb on + strand, within Psyr_1695at 1903.158 kb on - strand, within Psyr_1695at 1903.201 kb on - strand, within Psyr_1695at 1903.224 kb on - strand, within Psyr_1695at 1903.305 kb on - strand, within Psyr_1695at 1903.406 kb on + strand, within Psyr_1695at 1903.407 kb on - strand, within Psyr_1695at 1903.434 kb on - strand, within Psyr_1695at 1903.598 kb on + strandat 1903.598 kb on + strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.684 kb on - strand, within Psyr_1696at 1903.684 kb on - strand, within Psyr_1696at 1903.790 kb on + strand, within Psyr_1696at 1903.790 kb on + strand, within Psyr_1696at 1903.796 kb on + strand, within Psyr_1696at 1903.803 kb on + strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
remove
1,901,494 - -0.2
1,901,494 - -0.1
1,901,530 + -1.2
1,901,530 + -0.6
1,901,530 + +0.5
1,901,530 + -1.2
1,901,530 + -1.4
1,901,530 + +0.7
1,901,530 - +0.3
1,901,531 - +0.1
1,901,531 - +0.5
1,901,531 - -0.9
1,901,536 + -0.9
1,901,536 + +1.1
1,901,536 + -0.0
1,901,537 - -0.5
1,901,799 + Psyr_1693 0.39 +0.3
1,901,995 + Psyr_1693 0.66 -0.3
1,902,190 - -1.2
1,902,190 - +0.3
1,902,190 - +1.6
1,902,574 + Psyr_1694 0.56 -0.4
1,902,575 - Psyr_1694 0.56 -1.7
1,902,575 - Psyr_1694 0.56 -1.5
1,902,575 - Psyr_1694 0.56 +0.4
1,902,617 + Psyr_1694 0.64 -1.1
1,902,638 + Psyr_1694 0.68 -1.5
1,902,866 + +0.1
1,902,866 + +0.4
1,902,866 + -0.1
1,902,866 + +0.1
1,902,866 + -0.5
1,902,866 + -1.0
1,902,867 - -1.6
1,902,867 - +0.1
1,902,867 - +0.6
1,902,868 + -0.1
1,902,868 + +0.1
1,902,868 + +1.6
1,902,868 + -0.8
1,902,868 + +0.5
1,902,868 + +0.4
1,902,868 + +0.4
1,902,868 + -0.1
1,902,868 + +1.4
1,902,868 + -0.2
1,902,868 + -0.6
1,902,868 + +2.0
1,902,868 + -0.3
1,902,868 + -0.3
1,902,869 - -0.0
1,902,869 - -0.4
1,902,869 - -1.2
1,902,869 - -1.7
1,902,869 - -0.2
1,902,869 - -0.1
1,902,869 - -0.2
1,902,869 - -0.1
1,902,869 - -0.2
1,902,869 - +0.6
1,902,869 - -0.1
1,902,869 - -0.9
1,902,869 - +0.1
1,902,869 - +0.1
1,902,869 - -0.4
1,902,869 - +0.4
1,902,869 - -2.1
1,902,869 - +0.5
1,902,869 - +1.1
1,902,871 - +1.1
1,902,871 - +0.4
1,902,871 - -0.6
1,902,871 - -1.7
1,903,140 - Psyr_1695 0.36 +0.6
1,903,157 + Psyr_1695 0.38 +1.4
1,903,157 + Psyr_1695 0.38 +0.1
1,903,157 + Psyr_1695 0.38 -0.7
1,903,158 - Psyr_1695 0.38 -0.1
1,903,201 - Psyr_1695 0.45 +0.1
1,903,224 - Psyr_1695 0.48 -0.6
1,903,305 - Psyr_1695 0.61 -0.6
1,903,406 + Psyr_1695 0.76 -2.2
1,903,407 - Psyr_1695 0.76 +0.6
1,903,434 - Psyr_1695 0.80 -0.0
1,903,598 + -0.1
1,903,598 + +0.6
1,903,599 - -2.2
1,903,599 - -1.0
1,903,599 - +1.0
1,903,599 - +0.7
1,903,599 - -1.4
1,903,599 - +0.6
1,903,638 + Psyr_1696 0.13 -0.7
1,903,638 + Psyr_1696 0.13 +1.0
1,903,638 + Psyr_1696 0.13 +0.1
1,903,638 + Psyr_1696 0.13 -1.6
1,903,638 + Psyr_1696 0.13 +0.7
1,903,638 + Psyr_1696 0.13 -0.4
1,903,638 + Psyr_1696 0.13 +0.8
1,903,638 + Psyr_1696 0.13 -0.1
1,903,638 + Psyr_1696 0.13 +0.8
1,903,638 + Psyr_1696 0.13 -1.1
1,903,638 + Psyr_1696 0.13 +0.5
1,903,638 + Psyr_1696 0.13 -0.3
1,903,638 + Psyr_1696 0.13 +0.6
1,903,638 + Psyr_1696 0.13 -0.3
1,903,638 + Psyr_1696 0.13 -0.3
1,903,638 + Psyr_1696 0.13 +2.0
1,903,638 + Psyr_1696 0.13 +0.3
1,903,638 + Psyr_1696 0.13 +0.1
1,903,639 - Psyr_1696 0.14 -2.4
1,903,639 - Psyr_1696 0.14 +0.4
1,903,639 - Psyr_1696 0.14 -0.4
1,903,639 - Psyr_1696 0.14 +1.0
1,903,639 - Psyr_1696 0.14 -0.2
1,903,639 - Psyr_1696 0.14 -1.4
1,903,639 - Psyr_1696 0.14 +1.1
1,903,639 - Psyr_1696 0.14 -0.0
1,903,639 - Psyr_1696 0.14 +1.3
1,903,639 - Psyr_1696 0.14 +0.6
1,903,639 - Psyr_1696 0.14 +0.5
1,903,639 - Psyr_1696 0.14 +0.2
1,903,639 - Psyr_1696 0.14 +0.1
1,903,639 - Psyr_1696 0.14 +0.3
1,903,639 - Psyr_1696 0.14 +0.8
1,903,684 - Psyr_1696 0.24 -1.4
1,903,684 - Psyr_1696 0.24 +0.5
1,903,790 + Psyr_1696 0.49 +0.2
1,903,790 + Psyr_1696 0.49 +0.4
1,903,796 + Psyr_1696 0.50 +0.4
1,903,803 + Psyr_1696 0.52 +0.1
1,903,804 - Psyr_1696 0.52 -1.0
1,903,804 - Psyr_1696 0.52 +1.3
1,903,804 - Psyr_1696 0.52 -1.4
1,903,804 - Psyr_1696 0.52 +0.4
1,903,804 - Psyr_1696 0.52 +0.1

Or see this region's nucleotide sequence