Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1648

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1646 and Psyr_1647 are separated by 15 nucleotidesPsyr_1647 and Psyr_1648 are separated by 193 nucleotidesPsyr_1648 and Psyr_1649 are separated by 114 nucleotides Psyr_1646: Psyr_1646 - [Acyl-carrier-protein] S-malonyltransferase, at 1,851,557 to 1,852,495 _1646 Psyr_1647: Psyr_1647 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 1,852,511 to 1,853,254 _1647 Psyr_1648: Psyr_1648 - Acyl carrier protein (ACP), at 1,853,448 to 1,853,690 _1648 Psyr_1649: Psyr_1649 - 3-oxoacyl-[acyl-carrier-protein] synthase II, at 1,853,805 to 1,855,049 _1649 Position (kb) 1853 1854Strain fitness (log2 ratio) -2 -1 0 1 2at 1853.243 kb on + strandat 1853.252 kb on + strandat 1853.252 kb on + strandat 1853.252 kb on + strandat 1853.252 kb on + strandat 1853.252 kb on + strandat 1853.283 kb on + strandat 1853.306 kb on + strandat 1853.306 kb on + strandat 1853.319 kb on + strandat 1853.319 kb on + strandat 1853.390 kb on + strandat 1853.392 kb on + strandat 1853.392 kb on + strandat 1854.228 kb on - strand, within Psyr_1649

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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1,853,243 + +1.3
1,853,252 + +2.3
1,853,252 + -0.3
1,853,252 + +0.0
1,853,252 + -1.9
1,853,252 + +1.7
1,853,283 + -0.1
1,853,306 + +1.3
1,853,306 + +1.1
1,853,319 + -0.7
1,853,319 + +0.0
1,853,390 + +2.7
1,853,392 + -0.9
1,853,392 + -0.9
1,854,228 - Psyr_1649 0.34 -0.1

Or see this region's nucleotide sequence