Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1614

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
1,815,770	-				+0.4
1,815,791	-				-0.5
1,815,791	-				-1.1
1,815,791	-				+0.2
1,815,791	-				-1.4
1,815,791	-				-0.3
1,815,982	+		Psyr_1613	0.13	-3.2
1,815,982	+		Psyr_1613	0.13	-2.1
1,815,982	+		Psyr_1613	0.13	-0.9
1,815,983	-		Psyr_1613	0.13	-3.8
1,815,983	-		Psyr_1613	0.13	-1.3
1,816,088	-		Psyr_1613	0.27	-1.6
1,816,168	+		Psyr_1613	0.38	-2.5
1,816,168	+		Psyr_1613	0.38	-2.6
1,816,168	+		Psyr_1613	0.38	-2.1
1,816,168	+		Psyr_1613	0.38	-1.5
1,816,169	-		Psyr_1613	0.38	-1.9
1,816,169	-		Psyr_1613	0.38	-2.9
1,816,169	-		Psyr_1613	0.38	-2.8
1,816,473	-		Psyr_1613	0.79	-3.3
1,816,594	-				-3.0
1,816,594	-				-2.3
1,816,635	+				-2.6
1,816,635	+				-0.3
1,816,636	-				+0.1
1,816,637	+				-1.5
1,816,638	-				-0.6
1,816,638	-				-1.0
1,816,638	-				-0.4
1,816,638	-				-1.8
1,816,638	-				+1.4
1,816,638	-				+1.0
1,816,638	-				+0.9
1,816,638	-				-0.0
1,816,638	-				+0.1
1,816,672	-				-1.4
1,816,672	-				-0.8
1,816,672	-				+3.0
1,816,672	-				-0.2
1,816,672	-				+0.4
1,816,672	-				+1.3
1,816,673	+				-1.3
1,816,714	+				+2.3
1,816,714	+				-0.3
1,816,715	-				-1.0
1,816,715	-				-2.2
1,816,715	-				+0.8
1,816,715	-				+0.2
1,816,891	-		Psyr_1614	0.15	-0.7
1,816,891	-		Psyr_1614	0.15	-1.6
1,817,154	+		Psyr_1614	0.43	-1.2
1,817,202	+		Psyr_1614	0.49	-0.5
1,817,202	+		Psyr_1614	0.49	-0.5
1,817,203	-		Psyr_1614	0.49	+0.1
1,817,315	-		Psyr_1614	0.61	-0.7
1,817,341	-		Psyr_1614	0.63	-0.5
1,817,611	-				-2.3
1,817,662	+				-0.3
1,817,662	+				-0.6
1,817,664	+				-0.3
1,817,664	+				-0.4
1,817,664	+				+0.4
1,817,664	+				+0.7
1,817,664	+				+1.4
1,817,665	-				+0.3
1,817,665	-				-0.3
1,817,665	-				-0.3
1,817,665	-				+0.5
1,817,665	-				+0.7
1,817,665	-				-0.2
1,817,665	-				+0.4
1,817,675	+				-2.3
1,817,675	+				-0.4
1,817,675	+				+0.3
1,817,676	-				-0.9
1,817,676	-				-0.5
1,817,679	+				-2.0
1,817,679	+				+2.3
1,817,680	-				+0.3
1,817,680	-				-1.3
1,817,680	-				+1.3
1,817,680	-				-0.5
1,817,680	-				+0.5
1,817,680	-				-0.0
1,817,711	+				-1.9
1,817,711	+				-0.3
1,817,711	+				+0.0
1,817,711	+				+0.1
1,817,711	+				-0.2
1,817,711	+				+0.7
1,817,711	+				-2.2
1,817,712	-				-0.2
1,817,712	-				+0.4
1,817,712	-				-0.1
1,817,712	-				-0.2
1,817,712	-				-0.8
1,817,712	-				-0.3
1,817,712	-				-1.6
1,817,712	-				-0.7
1,817,712	-				+0.6
1,817,712	-				+0.4
1,817,808	-				-0.1
1,817,997	+		Psyr_1615	0.24	+0.9
1,818,259	-		Psyr_1615	0.46	-0.6
1,818,363	-		Psyr_1615	0.55	+0.8
1,818,363	-		Psyr_1615	0.55	-0.5
1,818,469	+		Psyr_1615	0.64	+2.0
1,818,470	-		Psyr_1615	0.64	-0.0
1,818,470	-		Psyr_1615	0.64	-1.1
1,818,556	+		Psyr_1615	0.71	-0.9
1,818,562	+		Psyr_1615	0.72	+1.1