Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1581

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1580 and Psyr_1581 are separated by 421 nucleotidesPsyr_1581 and Psyr_1582 overlap by 4 nucleotides Psyr_1580: Psyr_1580 - AAA ATPase, central region:AAA ATPase, central region, at 1,774,874 to 1,775,719 _1580 Psyr_1581: Psyr_1581 - conserved hypothetical protein, at 1,776,141 to 1,776,638 _1581 Psyr_1582: Psyr_1582 - conserved hypothetical protein, at 1,776,635 to 1,777,702 _1582 Position (kb) 1776 1777Strain fitness (log2 ratio) -2 -1 0 1 2at 1775.193 kb on + strand, within Psyr_1580at 1775.193 kb on + strand, within Psyr_1580at 1775.194 kb on - strand, within Psyr_1580at 1775.194 kb on - strand, within Psyr_1580at 1775.194 kb on - strand, within Psyr_1580at 1775.194 kb on - strand, within Psyr_1580at 1775.251 kb on + strand, within Psyr_1580at 1775.251 kb on + strand, within Psyr_1580at 1775.251 kb on + strand, within Psyr_1580at 1775.252 kb on - strand, within Psyr_1580at 1775.252 kb on - strand, within Psyr_1580at 1775.301 kb on + strand, within Psyr_1580at 1775.307 kb on + strand, within Psyr_1580at 1775.307 kb on + strand, within Psyr_1580at 1775.307 kb on + strand, within Psyr_1580at 1775.308 kb on - strand, within Psyr_1580at 1775.308 kb on - strand, within Psyr_1580at 1775.439 kb on + strand, within Psyr_1580at 1775.439 kb on + strand, within Psyr_1580at 1775.440 kb on - strand, within Psyr_1580at 1775.440 kb on - strand, within Psyr_1580at 1775.447 kb on + strand, within Psyr_1580at 1775.447 kb on + strand, within Psyr_1580at 1775.448 kb on - strand, within Psyr_1580at 1775.448 kb on - strand, within Psyr_1580at 1775.448 kb on - strand, within Psyr_1580at 1775.505 kb on + strand, within Psyr_1580at 1775.512 kb on - strand, within Psyr_1580at 1775.554 kb on + strand, within Psyr_1580at 1775.554 kb on + strand, within Psyr_1580at 1775.694 kb on + strandat 1775.694 kb on + strandat 1775.705 kb on - strandat 1775.771 kb on + strandat 1775.796 kb on + strandat 1775.796 kb on + strandat 1775.796 kb on + strandat 1775.796 kb on + strandat 1775.797 kb on - strandat 1775.797 kb on - strandat 1775.797 kb on - strandat 1775.797 kb on - strandat 1775.798 kb on + strandat 1775.875 kb on + strandat 1775.882 kb on + strandat 1775.939 kb on + strandat 1775.957 kb on + strandat 1775.957 kb on + strandat 1775.957 kb on + strandat 1775.957 kb on + strandat 1775.957 kb on + strandat 1775.957 kb on + strandat 1775.958 kb on - strandat 1775.958 kb on - strandat 1776.045 kb on - strandat 1776.045 kb on - strandat 1776.378 kb on + strand, within Psyr_1581at 1776.378 kb on + strand, within Psyr_1581at 1776.378 kb on + strand, within Psyr_1581at 1776.379 kb on - strand, within Psyr_1581at 1776.379 kb on - strand, within Psyr_1581at 1776.379 kb on - strand, within Psyr_1581at 1776.423 kb on - strand, within Psyr_1581at 1776.610 kb on + strandat 1776.610 kb on + strandat 1776.610 kb on + strandat 1776.611 kb on - strandat 1776.611 kb on - strandat 1776.611 kb on - strandat 1776.657 kb on + strandat 1776.658 kb on - strandat 1776.668 kb on - strandat 1776.668 kb on - strandat 1776.881 kb on + strand, within Psyr_1582at 1776.881 kb on + strand, within Psyr_1582at 1776.881 kb on + strand, within Psyr_1582at 1776.881 kb on + strand, within Psyr_1582at 1776.881 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.908 kb on + strand, within Psyr_1582at 1776.909 kb on - strand, within Psyr_1582at 1776.909 kb on - strand, within Psyr_1582at 1776.909 kb on - strand, within Psyr_1582at 1776.912 kb on + strand, within Psyr_1582at 1776.912 kb on + strand, within Psyr_1582at 1776.912 kb on + strand, within Psyr_1582at 1776.913 kb on - strand, within Psyr_1582at 1777.181 kb on - strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.182 kb on + strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.183 kb on - strand, within Psyr_1582at 1777.241 kb on - strand, within Psyr_1582at 1777.241 kb on - strand, within Psyr_1582at 1777.288 kb on + strand, within Psyr_1582at 1777.288 kb on + strand, within Psyr_1582at 1777.288 kb on + strand, within Psyr_1582at 1777.288 kb on + strand, within Psyr_1582at 1777.289 kb on - strand, within Psyr_1582at 1777.289 kb on - strand, within Psyr_1582at 1777.289 kb on - strand, within Psyr_1582at 1777.572 kb on + strand, within Psyr_1582at 1777.605 kb on + strandat 1777.605 kb on + strandat 1777.605 kb on + strandat 1777.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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1,775,193 + Psyr_1580 0.38 -0.1
1,775,193 + Psyr_1580 0.38 +0.0
1,775,194 - Psyr_1580 0.38 +0.3
1,775,194 - Psyr_1580 0.38 -0.4
1,775,194 - Psyr_1580 0.38 -0.6
1,775,194 - Psyr_1580 0.38 -0.2
1,775,251 + Psyr_1580 0.45 +2.2
1,775,251 + Psyr_1580 0.45 +0.3
1,775,251 + Psyr_1580 0.45 +0.2
1,775,252 - Psyr_1580 0.45 +0.9
1,775,252 - Psyr_1580 0.45 +0.6
1,775,301 + Psyr_1580 0.50 +0.4
1,775,307 + Psyr_1580 0.51 +0.7
1,775,307 + Psyr_1580 0.51 +0.1
1,775,307 + Psyr_1580 0.51 +0.1
1,775,308 - Psyr_1580 0.51 +0.1
1,775,308 - Psyr_1580 0.51 +0.2
1,775,439 + Psyr_1580 0.67 +0.5
1,775,439 + Psyr_1580 0.67 -1.5
1,775,440 - Psyr_1580 0.67 +0.2
1,775,440 - Psyr_1580 0.67 +0.7
1,775,447 + Psyr_1580 0.68 +1.5
1,775,447 + Psyr_1580 0.68 +1.0
1,775,448 - Psyr_1580 0.68 +1.9
1,775,448 - Psyr_1580 0.68 +0.4
1,775,448 - Psyr_1580 0.68 +0.4
1,775,505 + Psyr_1580 0.75 -0.3
1,775,512 - Psyr_1580 0.75 +1.1
1,775,554 + Psyr_1580 0.80 +0.0
1,775,554 + Psyr_1580 0.80 +0.2
1,775,694 + +0.5
1,775,694 + -1.6
1,775,705 - -0.3
1,775,771 + -0.3
1,775,796 + +0.6
1,775,796 + +0.6
1,775,796 + +0.4
1,775,796 + -0.1
1,775,797 - +0.8
1,775,797 - +0.5
1,775,797 - -0.1
1,775,797 - -0.8
1,775,798 + +0.1
1,775,875 + -0.8
1,775,882 + -0.7
1,775,939 + +0.7
1,775,957 + -0.5
1,775,957 + +0.3
1,775,957 + +0.7
1,775,957 + +1.2
1,775,957 + +1.0
1,775,957 + -0.2
1,775,958 - -0.1
1,775,958 - -1.9
1,776,045 - +1.2
1,776,045 - -0.7
1,776,378 + Psyr_1581 0.48 -0.3
1,776,378 + Psyr_1581 0.48 -1.7
1,776,378 + Psyr_1581 0.48 -1.2
1,776,379 - Psyr_1581 0.48 -0.4
1,776,379 - Psyr_1581 0.48 +0.2
1,776,379 - Psyr_1581 0.48 +0.3
1,776,423 - Psyr_1581 0.57 -2.1
1,776,610 + -0.4
1,776,610 + -0.0
1,776,610 + -2.2
1,776,611 - -0.6
1,776,611 - -0.7
1,776,611 - +0.1
1,776,657 + -0.9
1,776,658 - -0.5
1,776,668 - -0.5
1,776,668 - +0.0
1,776,881 + Psyr_1582 0.23 -0.9
1,776,881 + Psyr_1582 0.23 +0.1
1,776,881 + Psyr_1582 0.23 -1.3
1,776,881 + Psyr_1582 0.23 -0.3
1,776,881 + Psyr_1582 0.23 +0.8
1,776,908 + Psyr_1582 0.26 -1.3
1,776,908 + Psyr_1582 0.26 +0.4
1,776,908 + Psyr_1582 0.26 -0.0
1,776,908 + Psyr_1582 0.26 -0.0
1,776,908 + Psyr_1582 0.26 -1.0
1,776,908 + Psyr_1582 0.26 -0.1
1,776,909 - Psyr_1582 0.26 +1.0
1,776,909 - Psyr_1582 0.26 +0.3
1,776,909 - Psyr_1582 0.26 +0.3
1,776,912 + Psyr_1582 0.26 -0.3
1,776,912 + Psyr_1582 0.26 -1.0
1,776,912 + Psyr_1582 0.26 -1.0
1,776,913 - Psyr_1582 0.26 -0.1
1,777,181 - Psyr_1582 0.51 +2.5
1,777,182 + Psyr_1582 0.51 +0.1
1,777,182 + Psyr_1582 0.51 -0.1
1,777,182 + Psyr_1582 0.51 -0.2
1,777,182 + Psyr_1582 0.51 -0.2
1,777,182 + Psyr_1582 0.51 +0.5
1,777,182 + Psyr_1582 0.51 +1.0
1,777,182 + Psyr_1582 0.51 -0.9
1,777,182 + Psyr_1582 0.51 -0.2
1,777,183 - Psyr_1582 0.51 -0.1
1,777,183 - Psyr_1582 0.51 +0.0
1,777,183 - Psyr_1582 0.51 -0.9
1,777,183 - Psyr_1582 0.51 +0.0
1,777,183 - Psyr_1582 0.51 +1.0
1,777,183 - Psyr_1582 0.51 -0.5
1,777,183 - Psyr_1582 0.51 +0.3
1,777,241 - Psyr_1582 0.57 +0.8
1,777,241 - Psyr_1582 0.57 -0.0
1,777,288 + Psyr_1582 0.61 -0.6
1,777,288 + Psyr_1582 0.61 +0.9
1,777,288 + Psyr_1582 0.61 +0.8
1,777,288 + Psyr_1582 0.61 +1.7
1,777,289 - Psyr_1582 0.61 +1.4
1,777,289 - Psyr_1582 0.61 -0.6
1,777,289 - Psyr_1582 0.61 -0.9
1,777,572 + Psyr_1582 0.88 -0.8
1,777,605 + -0.1
1,777,605 + -0.3
1,777,605 + -0.1
1,777,606 - +0.7

Or see this region's nucleotide sequence