Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1527 and Psyr_1528 are separated by 2 nucleotides Psyr_1528 and Psyr_1529 are separated by 231 nucleotides Psyr_1529 and Psyr_1530 are separated by 1 nucleotides Psyr_1530 and Psyr_1531 overlap by 4 nucleotides
Psyr_1527: Psyr_1527 - conserved hypothetical protein, at 1,717,367 to 1,719,127
_1527
Psyr_1528: Psyr_1528 - Arc-like DNA binding protein, at 1,719,130 to 1,719,393
_1528
Psyr_1529: Psyr_1529 - hypothetical protein, at 1,719,625 to 1,720,032
_1529
Psyr_1530: Psyr_1530 - hypothetical protein, at 1,720,034 to 1,720,375
_1530
Psyr_1531: Psyr_1531 - replicative DNA helicase (phage and plasmid), at 1,720,372 to 1,721,718
_1531
Position (kb) 1720
1721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1719.083 kb on + strand at 1719.083 kb on + strand at 1719.084 kb on - strand at 1719.084 kb on - strand at 1719.131 kb on + strand at 1719.207 kb on + strand, within Psyr_1528 at 1719.207 kb on + strand, within Psyr_1528 at 1719.207 kb on + strand, within Psyr_1528 at 1719.256 kb on + strand, within Psyr_1528 at 1719.256 kb on + strand, within Psyr_1528 at 1719.324 kb on + strand, within Psyr_1528 at 1719.521 kb on - strand at 1719.521 kb on - strand at 1719.521 kb on - strand at 1719.521 kb on - strand at 1719.521 kb on - strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.613 kb on + strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.614 kb on - strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.619 kb on + strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.620 kb on - strand at 1719.678 kb on - strand, within Psyr_1529 at 1719.689 kb on - strand, within Psyr_1529 at 1719.689 kb on - strand, within Psyr_1529 at 1719.868 kb on - strand, within Psyr_1529 at 1719.931 kb on + strand, within Psyr_1529 at 1719.931 kb on + strand, within Psyr_1529 at 1719.931 kb on + strand, within Psyr_1529 at 1719.931 kb on + strand, within Psyr_1529 at 1719.931 kb on + strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.932 kb on - strand, within Psyr_1529 at 1719.935 kb on + strand, within Psyr_1529 at 1719.935 kb on + strand, within Psyr_1529 at 1719.935 kb on + strand, within Psyr_1529 at 1719.936 kb on - strand, within Psyr_1529 at 1719.936 kb on - strand, within Psyr_1529 at 1719.936 kb on - strand, within Psyr_1529 at 1720.014 kb on + strand at 1720.022 kb on + strand at 1720.023 kb on - strand at 1720.023 kb on - strand at 1720.023 kb on - strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.024 kb on + strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.025 kb on - strand at 1720.144 kb on + strand, within Psyr_1530 at 1720.145 kb on - strand, within Psyr_1530 at 1720.145 kb on - strand, within Psyr_1530 at 1720.173 kb on + strand, within Psyr_1530 at 1720.173 kb on + strand, within Psyr_1530 at 1720.173 kb on + strand, within Psyr_1530 at 1720.174 kb on - strand, within Psyr_1530 at 1720.241 kb on + strand, within Psyr_1530 at 1720.346 kb on + strand at 1720.360 kb on + strand at 1720.523 kb on + strand, within Psyr_1531 at 1720.524 kb on - strand, within Psyr_1531 at 1720.524 kb on - strand, within Psyr_1531 at 1720.540 kb on + strand, within Psyr_1531 at 1720.540 kb on + strand, within Psyr_1531 at 1720.540 kb on + strand, within Psyr_1531 at 1720.540 kb on + strand, within Psyr_1531 at 1720.540 kb on + strand, within Psyr_1531 at 1720.541 kb on - strand, within Psyr_1531 at 1720.541 kb on - strand, within Psyr_1531 at 1720.541 kb on - strand, within Psyr_1531 at 1720.541 kb on - strand, within Psyr_1531 at 1720.602 kb on + strand, within Psyr_1531 at 1720.602 kb on + strand, within Psyr_1531 at 1720.602 kb on + strand, within Psyr_1531 at 1720.603 kb on - strand, within Psyr_1531 at 1720.603 kb on - strand, within Psyr_1531 at 1720.603 kb on - strand, within Psyr_1531 at 1720.702 kb on + strand, within Psyr_1531 at 1720.702 kb on + strand, within Psyr_1531 at 1720.702 kb on + strand, within Psyr_1531 at 1720.703 kb on - strand, within Psyr_1531 at 1720.703 kb on - strand, within Psyr_1531 at 1720.703 kb on - strand, within Psyr_1531 at 1720.735 kb on - strand, within Psyr_1531 at 1720.858 kb on + strand, within Psyr_1531 at 1720.858 kb on + strand, within Psyr_1531 at 1720.858 kb on + strand, within Psyr_1531 at 1720.858 kb on + strand, within Psyr_1531 at 1720.859 kb on - strand, within Psyr_1531 at 1720.859 kb on - strand, within Psyr_1531 at 1720.859 kb on - strand, within Psyr_1531 at 1720.859 kb on - strand, within Psyr_1531 at 1720.859 kb on - strand at 1720.875 kb on - strand, within Psyr_1531 at 1720.985 kb on + strand, within Psyr_1531 at 1720.985 kb on + strand, within Psyr_1531 at 1720.986 kb on - strand, within Psyr_1531 at 1721.041 kb on - strand, within Psyr_1531 at 1721.063 kb on - strand, within Psyr_1531 at 1721.134 kb on + strand, within Psyr_1531 at 1721.134 kb on + strand, within Psyr_1531 at 1721.135 kb on - strand, within Psyr_1531 at 1721.135 kb on - strand, within Psyr_1531 at 1721.135 kb on - strand, within Psyr_1531 at 1721.235 kb on + strand, within Psyr_1531 at 1721.235 kb on + strand, within Psyr_1531 at 1721.235 kb on + strand, within Psyr_1531 at 1721.367 kb on - strand, within Psyr_1531
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 1,719,083 + -1.2 1,719,083 + +0.2 1,719,084 - -0.5 1,719,084 - -0.2 1,719,131 + -0.7 1,719,207 + Psyr_1528 0.29 +0.1 1,719,207 + Psyr_1528 0.29 -0.5 1,719,207 + Psyr_1528 0.29 +0.3 1,719,256 + Psyr_1528 0.48 +0.2 1,719,256 + Psyr_1528 0.48 +1.8 1,719,324 + Psyr_1528 0.73 -1.8 1,719,521 - -0.7 1,719,521 - -0.6 1,719,521 - +1.4 1,719,521 - +0.8 1,719,521 - +2.9 1,719,613 + +0.0 1,719,613 + -0.5 1,719,613 + -0.1 1,719,613 + -0.2 1,719,613 + +1.4 1,719,613 + -1.5 1,719,613 + -0.6 1,719,613 + +1.2 1,719,613 + +0.8 1,719,613 + -0.2 1,719,613 + +1.2 1,719,613 + +0.7 1,719,613 + -0.0 1,719,613 + -0.1 1,719,613 + +0.9 1,719,613 + +0.9 1,719,614 - -0.9 1,719,614 - +0.8 1,719,614 - -0.1 1,719,614 - -0.3 1,719,614 - -1.9 1,719,614 - +2.0 1,719,614 - +0.6 1,719,619 + +0.3 1,719,619 + -0.8 1,719,619 + -0.6 1,719,619 + +0.5 1,719,619 + +0.8 1,719,619 + +0.8 1,719,619 + +0.9 1,719,619 + +1.1 1,719,619 + +0.0 1,719,619 + +0.3 1,719,619 + -0.4 1,719,619 + +0.5 1,719,619 + -0.5 1,719,619 + +0.3 1,719,619 + +0.6 1,719,619 + +0.7 1,719,620 - -0.6 1,719,620 - -0.2 1,719,620 - -0.3 1,719,620 - -0.7 1,719,620 - -0.2 1,719,620 - -0.8 1,719,620 - -0.5 1,719,620 - -0.7 1,719,620 - -0.3 1,719,620 - -0.2 1,719,620 - +0.3 1,719,620 - -0.1 1,719,620 - +0.4 1,719,620 - -0.7 1,719,620 - +0.8 1,719,620 - -0.7 1,719,620 - -0.2 1,719,620 - +0.2 1,719,678 - Psyr_1529 0.13 -0.6 1,719,689 - Psyr_1529 0.16 -0.6 1,719,689 - Psyr_1529 0.16 -0.3 1,719,868 - Psyr_1529 0.60 -0.2 1,719,931 + Psyr_1529 0.75 +0.0 1,719,931 + Psyr_1529 0.75 -0.2 1,719,931 + Psyr_1529 0.75 -1.6 1,719,931 + Psyr_1529 0.75 -0.7 1,719,931 + Psyr_1529 0.75 +0.8 1,719,932 - Psyr_1529 0.75 +0.8 1,719,932 - Psyr_1529 0.75 -0.8 1,719,932 - Psyr_1529 0.75 -0.2 1,719,932 - Psyr_1529 0.75 -1.2 1,719,932 - Psyr_1529 0.75 -0.1 1,719,932 - Psyr_1529 0.75 -0.1 1,719,932 - Psyr_1529 0.75 +0.2 1,719,932 - Psyr_1529 0.75 +0.5 1,719,932 - Psyr_1529 0.75 -0.4 1,719,932 - Psyr_1529 0.75 -0.6 1,719,935 + Psyr_1529 0.76 +0.6 1,719,935 + Psyr_1529 0.76 -0.4 1,719,935 + Psyr_1529 0.76 +0.2 1,719,936 - Psyr_1529 0.76 -0.4 1,719,936 - Psyr_1529 0.76 +0.5 1,719,936 - Psyr_1529 0.76 +0.8 1,720,014 + +1.0 1,720,022 + +0.6 1,720,023 - +1.0 1,720,023 - +1.3 1,720,023 - -0.6 1,720,024 + -0.4 1,720,024 + -0.2 1,720,024 + +3.1 1,720,024 + -0.1 1,720,024 + -0.1 1,720,024 + +0.3 1,720,024 + -1.6 1,720,024 + -0.1 1,720,024 + -0.0 1,720,024 + -0.1 1,720,025 - -0.7 1,720,025 - +0.2 1,720,025 - -2.1 1,720,025 - -2.9 1,720,025 - -2.1 1,720,025 - -1.9 1,720,025 - +0.8 1,720,025 - +0.4 1,720,025 - -0.2 1,720,025 - +0.0 1,720,025 - -0.5 1,720,025 - -1.8 1,720,025 - -0.9 1,720,025 - +0.0 1,720,025 - +0.0 1,720,144 + Psyr_1530 0.32 -0.3 1,720,145 - Psyr_1530 0.32 +0.4 1,720,145 - Psyr_1530 0.32 -2.4 1,720,173 + Psyr_1530 0.41 -0.8 1,720,173 + Psyr_1530 0.41 -0.3 1,720,173 + Psyr_1530 0.41 -1.0 1,720,174 - Psyr_1530 0.41 -0.6 1,720,241 + Psyr_1530 0.61 +0.2 1,720,346 + +1.0 1,720,360 + +0.4 1,720,523 + Psyr_1531 0.11 +0.3 1,720,524 - Psyr_1531 0.11 -0.1 1,720,524 - Psyr_1531 0.11 -0.2 1,720,540 + Psyr_1531 0.12 -0.3 1,720,540 + Psyr_1531 0.12 +0.4 1,720,540 + Psyr_1531 0.12 -1.0 1,720,540 + Psyr_1531 0.12 -0.9 1,720,540 + Psyr_1531 0.12 -0.2 1,720,541 - Psyr_1531 0.13 -0.5 1,720,541 - Psyr_1531 0.13 -1.7 1,720,541 - Psyr_1531 0.13 +0.6 1,720,541 - Psyr_1531 0.13 +0.6 1,720,602 + Psyr_1531 0.17 +0.1 1,720,602 + Psyr_1531 0.17 +0.1 1,720,602 + Psyr_1531 0.17 +1.2 1,720,603 - Psyr_1531 0.17 -0.3 1,720,603 - Psyr_1531 0.17 -0.2 1,720,603 - Psyr_1531 0.17 -0.7 1,720,702 + Psyr_1531 0.24 -0.0 1,720,702 + Psyr_1531 0.24 -0.1 1,720,702 + Psyr_1531 0.24 -0.7 1,720,703 - Psyr_1531 0.25 +1.8 1,720,703 - Psyr_1531 0.25 +3.3 1,720,703 - Psyr_1531 0.25 -0.2 1,720,735 - Psyr_1531 0.27 -0.7 1,720,858 + Psyr_1531 0.36 -0.4 1,720,858 + Psyr_1531 0.36 +0.7 1,720,858 + Psyr_1531 0.36 -0.2 1,720,858 + Psyr_1531 0.36 -0.0 1,720,859 - Psyr_1531 0.36 +0.4 1,720,859 - Psyr_1531 0.36 -0.2 1,720,859 - Psyr_1531 0.36 +0.3 1,720,859 - Psyr_1531 0.36 +1.8 1,720,859 - +1.3 1,720,875 - Psyr_1531 0.37 -0.7 1,720,985 + Psyr_1531 0.46 -0.1 1,720,985 + Psyr_1531 0.46 -0.5 1,720,986 - Psyr_1531 0.46 -0.7 1,721,041 - Psyr_1531 0.50 +1.8 1,721,063 - Psyr_1531 0.51 +1.1 1,721,134 + Psyr_1531 0.57 +0.6 1,721,134 + Psyr_1531 0.57 -2.1 1,721,135 - Psyr_1531 0.57 -1.2 1,721,135 - Psyr_1531 0.57 -0.1 1,721,135 - Psyr_1531 0.57 -1.0 1,721,235 + Psyr_1531 0.64 +0.7 1,721,235 + Psyr_1531 0.64 -0.1 1,721,235 + Psyr_1531 0.64 +0.6 1,721,367 - Psyr_1531 0.74 +0.0
Or see this region's nucleotide sequence