Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1462

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
1,648,081	+		Psyr_1461	0.28	-0.3
1,648,081	+		Psyr_1461	0.28	+0.8
1,648,082	-		Psyr_1461	0.28	+1.0
1,648,082	-		Psyr_1461	0.28	-0.3
1,648,087	-		Psyr_1461	0.28	-0.4
1,648,088	+		Psyr_1461	0.28	+0.2
1,648,132	+		Psyr_1461	0.31	-0.2
1,648,133	-		Psyr_1461	0.32	-0.7
1,648,133	-		Psyr_1461	0.32	-0.2
1,648,167	+		Psyr_1461	0.34	-0.8
1,648,187	-		Psyr_1461	0.35	-2.6
1,648,263	-		Psyr_1461	0.41	+0.2
1,648,265	-		Psyr_1461	0.41	+0.2
1,648,265	-		Psyr_1461	0.41	-1.3
1,648,328	-		Psyr_1461	0.46	+1.8
1,648,375	+		Psyr_1461	0.49	+0.4
1,648,376	-		Psyr_1461	0.49	-0.0
1,648,536	-		Psyr_1461	0.61	+1.0
1,648,539	+		Psyr_1461	0.61	+0.1
1,648,698	+		Psyr_1461	0.73	-0.7
1,648,787	+		Psyr_1461	0.79	+1.3
1,648,788	-		Psyr_1461	0.79	+0.3
1,648,830	+		Psyr_1461	0.83	-0.8
1,648,831	-		Psyr_1461	0.83	+0.3
1,648,848	+		Psyr_1461	0.84	+0.6
1,648,931	-				+0.0
1,648,999	+				+2.0
1,649,010	-				-0.4
1,649,014	-				-0.6
1,649,025	+				-0.9
1,649,066	-				+1.2
1,649,077	+				-1.3
1,649,077	+				-0.5
1,649,092	+				-0.0
1,649,096	+				-0.2
1,649,102	+				-0.1
1,649,102	+				+2.8
1,649,102	+				-0.1
1,649,103	-				-0.2
1,649,174	-		Psyr_1462	0.19	-0.9
1,649,174	-		Psyr_1462	0.19	-1.1
1,649,199	+		Psyr_1462	0.24	-0.8
1,649,223	-		Psyr_1462	0.28	-2.2
1,649,226	-		Psyr_1462	0.29	-1.5
1,649,226	-		Psyr_1462	0.29	+2.3
1,649,226	-		Psyr_1462	0.29	-1.0
1,649,275	+		Psyr_1462	0.38	-0.9
1,649,327	+		Psyr_1462	0.48	-0.6
1,649,334	+		Psyr_1462	0.49	-0.3
1,649,361	+		Psyr_1462	0.54	-2.6
1,649,361	+		Psyr_1462	0.54	+0.2
1,649,361	+		Psyr_1462	0.54	-0.5
1,649,361	+		Psyr_1462	0.54	-1.2
1,649,372	+		Psyr_1462	0.56	+0.2
1,649,459	-		Psyr_1462	0.72	-2.8
1,649,485	-		Psyr_1462	0.77	-2.3
1,649,548	-		Psyr_1462	0.89	+0.8
1,649,549	+		Psyr_1462	0.89	-0.7
1,649,549	+		Psyr_1462	0.89	-1.0
1,649,563	+				+0.1
1,649,654	+				-0.5
1,649,654	+				+1.1
1,649,654	+				-0.2
1,649,654	+				-0.4
1,649,654	+				-1.0
1,649,661	+				-1.2
1,649,661	+				-0.6
1,649,661	+				-0.5
1,649,661	+				+0.8
1,649,662	-				+0.3
1,649,665	+				-0.2
1,649,665	+				-0.3
1,649,665	+				+0.4
1,649,665	+				-0.5
1,649,666	-				-1.4
1,649,666	-				-1.2
1,649,717	+				-0.3
1,649,717	+				-3.2
1,649,718	-				-0.4
1,649,718	-				+0.5
1,649,718	-				-1.0
1,649,718	-				-1.6
1,649,721	+				+0.0
1,649,721	+				-0.5
1,649,721	+				-2.0
1,649,721	+				+2.3
1,649,721	+				-0.4
1,649,721	+				+0.8
1,649,721	+				+0.0
1,649,721	+				-0.1
1,649,721	+				-0.5
1,649,721	+				+0.8
1,649,721	+				-0.4
1,649,721	+				+0.6
1,649,721	+				+0.4
1,649,721	+				-0.6
1,649,721	+				-0.1
1,649,721	+				+0.5
1,649,722	-				-0.8
1,649,722	-				+0.3
1,649,722	-				+0.4
1,649,722	-				-0.2
1,649,722	-				-0.4
1,649,722	-				-0.8
1,649,722	-				+0.0
1,649,722	-				-1.7
1,649,722	-				-1.0
1,649,722	-				-1.9
1,649,722	-				+1.6
1,649,722	-				-1.8
1,649,722	-				-0.1
1,649,722	-				+0.8
1,649,722	-				+0.4
1,649,722	-				-0.5
1,649,722	-				+0.3
1,649,722	-				+0.3
1,649,722	-				-2.1
1,649,722	-				-0.2
1,649,722	-				-0.0
1,649,723	+				-1.2
1,649,723	+				-1.1
1,649,723	+				-0.7
1,649,723	+				+0.8
1,649,723	+				+0.8
1,649,723	+				-0.2
1,649,723	+				+0.4
1,649,723	+				+0.4
1,649,724	-				+0.2
1,649,724	-				+1.0
1,649,724	-				-1.5
1,649,724	-				-0.4
1,649,724	-				-2.8
1,649,724	-				+1.0
1,649,724	-				-0.2
1,649,724	-				+1.0
1,649,725	+				-0.1
1,649,745	-				+0.8
1,649,781	+				+1.1
1,649,988	+				+1.2
1,649,988	+				-0.0
1,650,063	+		Psyr_1463	0.10	-0.3
1,650,063	+		Psyr_1463	0.10	-0.5
1,650,064	-		Psyr_1463	0.10	-1.2
1,650,072	+		Psyr_1463	0.11	+1.1
1,650,072	+		Psyr_1463	0.11	+1.3
1,650,073	-		Psyr_1463	0.11	+0.2
1,650,073	-		Psyr_1463	0.11	+1.4
1,650,073	-		Psyr_1463	0.11	-1.4
1,650,152	+		Psyr_1463	0.14	+0.4
1,650,152	+		Psyr_1463	0.14	-1.4
1,650,153	-		Psyr_1463	0.14	+0.3
1,650,153	-		Psyr_1463	0.14	-1.5
1,650,294	+		Psyr_1463	0.21	+0.1
1,650,295	-		Psyr_1463	0.21	+0.7
1,650,344	+		Psyr_1463	0.23	+0.3
1,650,344	+		Psyr_1463	0.23	-0.2
1,650,344	+		Psyr_1463	0.23	-0.6
1,650,344	+		Psyr_1463	0.23	-0.1
1,650,344	+		Psyr_1463	0.23	+0.5
1,650,344	+		Psyr_1463	0.23	+1.8
1,650,344	+		Psyr_1463	0.23	+1.1
1,650,344	+		Psyr_1463	0.23	+0.1
1,650,344	+		Psyr_1463	0.23	-0.2
1,650,344	+		Psyr_1463	0.23	-0.6
1,650,344	+		Psyr_1463	0.23	+0.4
1,650,344	+		Psyr_1463	0.23	+0.8
1,650,344	+		Psyr_1463	0.23	+0.0
1,650,344	+		Psyr_1463	0.23	-0.0
1,650,344	+		Psyr_1463	0.23	-0.5
1,650,345	-		Psyr_1463	0.23	+1.8
1,650,345	-		Psyr_1463	0.23	+0.6
1,650,345	-		Psyr_1463	0.23	+0.4
1,650,345	-		Psyr_1463	0.23	+1.3
1,650,345	-		Psyr_1463	0.23	+0.3
1,650,345	-		Psyr_1463	0.23	-0.5
1,650,345	-		Psyr_1463	0.23	-0.7
1,650,437	+		Psyr_1463	0.27	-0.9
1,650,437	+		Psyr_1463	0.27	-0.1
1,650,438	-		Psyr_1463	0.27	+1.5
1,650,508	+		Psyr_1463	0.30	+0.4
1,650,509	-		Psyr_1463	0.30	+0.9
1,650,509	-		Psyr_1463	0.30	-1.0
1,650,509	-		Psyr_1463	0.30	-0.7
1,650,596	+		Psyr_1463	0.34	-0.1
1,650,596	+		Psyr_1463	0.34	+0.4
1,650,597	-		Psyr_1463	0.34	+0.4