Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1305

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1303 and Psyr_1304 are separated by 7 nucleotidesPsyr_1304 and Psyr_1305 overlap by 4 nucleotidesPsyr_1305 and Psyr_1306 overlap by 1 nucleotidesPsyr_1306 and Psyr_1307 overlap by 4 nucleotides Psyr_1303: Psyr_1303 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 1,478,451 to 1,480,073 _1303 Psyr_1304: Psyr_1304 - CheW-like protein, at 1,480,081 to 1,480,617 _1304 Psyr_1305: Psyr_1305 - MCP methyltransferase, CheR-type, at 1,480,614 to 1,481,894 _1305 Psyr_1306: Psyr_1306 - CheW-like protein, at 1,481,894 to 1,482,583 _1306 Psyr_1307: Psyr_1307 - Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt, at 1,482,580 to 1,484,949 _1307 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -2 -1 0 1 2at 1479.651 kb on + strand, within Psyr_1303at 1479.720 kb on + strand, within Psyr_1303at 1479.720 kb on + strand, within Psyr_1303at 1479.720 kb on + strand, within Psyr_1303at 1479.720 kb on + strand, within Psyr_1303at 1479.720 kb on + strand, within Psyr_1303at 1479.721 kb on - strand, within Psyr_1303at 1479.721 kb on - strand, within Psyr_1303at 1479.721 kb on - strand, within Psyr_1303at 1480.152 kb on - strand, within Psyr_1304at 1480.336 kb on - strand, within Psyr_1304at 1480.454 kb on - strand, within Psyr_1304at 1480.570 kb on + strandat 1480.570 kb on + strandat 1480.752 kb on + strand, within Psyr_1305at 1480.951 kb on - strand, within Psyr_1305at 1481.106 kb on + strand, within Psyr_1305at 1481.161 kb on + strand, within Psyr_1305at 1481.162 kb on - strand, within Psyr_1305at 1481.178 kb on - strand, within Psyr_1305at 1481.214 kb on + strand, within Psyr_1305at 1481.214 kb on + strand, within Psyr_1305at 1481.247 kb on + strand, within Psyr_1305at 1481.247 kb on + strand, within Psyr_1305at 1481.247 kb on + strand, within Psyr_1305at 1481.248 kb on - strand, within Psyr_1305at 1481.248 kb on - strand, within Psyr_1305at 1481.248 kb on - strand, within Psyr_1305at 1481.248 kb on - strand, within Psyr_1305at 1481.248 kb on - strand, within Psyr_1305at 1481.578 kb on + strand, within Psyr_1305at 1481.748 kb on + strand, within Psyr_1305at 1481.749 kb on - strand, within Psyr_1305at 1481.763 kb on + strand, within Psyr_1305at 1481.764 kb on - strand, within Psyr_1305at 1481.764 kb on - strand, within Psyr_1305at 1481.764 kb on - strand, within Psyr_1305at 1481.876 kb on + strandat 1482.069 kb on - strand, within Psyr_1306at 1482.147 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.270 kb on + strand, within Psyr_1306at 1482.271 kb on - strand, within Psyr_1306at 1482.271 kb on - strand, within Psyr_1306at 1482.325 kb on + strand, within Psyr_1306at 1482.338 kb on - strand, within Psyr_1306at 1482.654 kb on - strandat 1482.654 kb on - strandat 1482.685 kb on - strandat 1482.888 kb on + strand, within Psyr_1307

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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1,479,651 + Psyr_1303 0.74 -0.7
1,479,720 + Psyr_1303 0.78 +0.2
1,479,720 + Psyr_1303 0.78 +0.1
1,479,720 + Psyr_1303 0.78 +1.4
1,479,720 + Psyr_1303 0.78 +1.4
1,479,720 + Psyr_1303 0.78 +0.7
1,479,721 - Psyr_1303 0.78 +1.0
1,479,721 - Psyr_1303 0.78 +1.4
1,479,721 - Psyr_1303 0.78 -0.1
1,480,152 - Psyr_1304 0.13 +1.1
1,480,336 - Psyr_1304 0.47 -0.3
1,480,454 - Psyr_1304 0.69 +0.3
1,480,570 + -0.7
1,480,570 + +1.2
1,480,752 + Psyr_1305 0.11 +1.9
1,480,951 - Psyr_1305 0.26 +0.7
1,481,106 + Psyr_1305 0.38 +0.2
1,481,161 + Psyr_1305 0.43 +0.7
1,481,162 - Psyr_1305 0.43 +0.4
1,481,178 - Psyr_1305 0.44 +0.0
1,481,214 + Psyr_1305 0.47 +0.1
1,481,214 + Psyr_1305 0.47 +0.2
1,481,247 + Psyr_1305 0.49 +1.0
1,481,247 + Psyr_1305 0.49 +1.8
1,481,247 + Psyr_1305 0.49 +0.8
1,481,248 - Psyr_1305 0.49 -0.7
1,481,248 - Psyr_1305 0.49 -1.8
1,481,248 - Psyr_1305 0.49 -0.4
1,481,248 - Psyr_1305 0.49 +0.6
1,481,248 - Psyr_1305 0.49 -0.2
1,481,578 + Psyr_1305 0.75 +1.8
1,481,748 + Psyr_1305 0.89 -2.1
1,481,749 - Psyr_1305 0.89 +0.4
1,481,763 + Psyr_1305 0.90 -0.2
1,481,764 - Psyr_1305 0.90 +0.9
1,481,764 - Psyr_1305 0.90 +1.8
1,481,764 - Psyr_1305 0.90 +1.3
1,481,876 + +1.3
1,482,069 - Psyr_1306 0.25 +1.4
1,482,147 + Psyr_1306 0.37 +0.4
1,482,270 + Psyr_1306 0.54 -0.8
1,482,270 + Psyr_1306 0.54 +1.3
1,482,270 + Psyr_1306 0.54 +0.8
1,482,270 + Psyr_1306 0.54 +0.6
1,482,271 - Psyr_1306 0.55 -0.5
1,482,271 - Psyr_1306 0.55 -0.8
1,482,325 + Psyr_1306 0.62 +0.1
1,482,338 - Psyr_1306 0.64 +0.1
1,482,654 - +0.4
1,482,654 - +0.9
1,482,685 - +0.3
1,482,888 + Psyr_1307 0.13 +2.5

Or see this region's nucleotide sequence