Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1269

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
1,432,337	-		Psyr_1268	0.47	-1.1
1,432,473	+		Psyr_1268	0.57	-1.0
1,432,479	+		Psyr_1268	0.57	+0.8
1,432,479	+		Psyr_1268	0.57	-0.5
1,432,479	+		Psyr_1268	0.57	-1.5
1,432,479	+		Psyr_1268	0.57	-2.5
1,432,480	-		Psyr_1268	0.57	-2.0
1,432,480	-		Psyr_1268	0.57	-3.2
1,432,492	+		Psyr_1268	0.58	-0.8
1,432,493	-		Psyr_1268	0.58	-1.0
1,432,493	-		Psyr_1268	0.58	+0.8
1,432,753	+		Psyr_1268	0.75	-1.8
1,432,754	-		Psyr_1268	0.75	-2.4
1,432,963	+		Psyr_1268	0.89	+0.3
1,433,132	+				-0.4
1,433,132	+				+0.0
1,433,133	-				-0.7
1,433,133	-				-0.5
1,433,134	+				-1.1
1,433,134	+				+1.8
1,433,134	+				+1.0
1,433,135	-				+0.6
1,433,135	-				-0.2
1,433,158	-				-0.7
1,433,184	+				+0.8
1,433,284	-				-0.2
1,433,284	-				-0.8
1,433,670	+				+0.3
1,433,670	+				-0.9
1,433,670	+				-0.3
1,433,670	+				-0.7
1,433,671	-				+0.0
1,433,671	-				-0.7
1,433,671	-				+0.8
1,433,671	-				-0.6
1,433,671	-				+0.6
1,433,671	-				+0.4
1,433,671	-				-2.0
1,433,671	-				+0.3
1,433,671	-				+0.5
1,433,674	+				+0.3
1,433,674	+				-0.8
1,433,674	+				+0.6
1,433,674	+				-1.0
1,433,675	-				-1.2
1,433,675	-				+0.2
1,433,675	-				-2.4
1,433,675	-				+1.9
1,433,675	-				-2.0
1,433,675	-				-0.5
1,433,675	-				-2.2
1,433,895	+		Psyr_1269	0.14	+1.0
1,434,064	-		Psyr_1269	0.19	-1.9
1,434,064	-		Psyr_1269	0.19	-1.0
1,434,096	+		Psyr_1269	0.19	-2.2
1,434,492	+		Psyr_1269	0.30	+1.4
1,435,025	+		Psyr_1269	0.43	-1.4
1,435,249	+		Psyr_1269	0.49	-0.7
1,435,591	-		Psyr_1269	0.58	+0.8
1,435,970	+		Psyr_1269	0.68	+0.5
1,436,442	+		Psyr_1269	0.80	-0.1
1,436,443	-		Psyr_1269	0.80	-0.8
1,436,632	-		Psyr_1269	0.85	+0.2
1,437,137	-				+1.4
1,437,231	+				+1.4
1,437,231	+				+0.2
1,437,232	-				-0.4
1,437,232	-				+0.5
1,437,242	+				-0.5
1,437,242	+				-0.8
1,437,243	-				+0.1
1,437,329	+		Psyr_1270	0.29	+0.7
1,437,522	-				+0.2
1,437,528	+				+0.2
1,437,528	+				-0.0
1,437,528	+				+0.2
1,437,529	-				-0.2
1,437,529	-				+0.2
1,437,529	-				+0.3
1,437,529	-				-0.6
1,437,717	+				+0.2
1,437,718	-				+0.0
1,437,781	+		Psyr_1271	0.19	+0.0
1,437,781	+		Psyr_1271	0.19	-0.7
1,437,781	+		Psyr_1271	0.19	-0.5
1,437,782	-		Psyr_1271	0.20	+0.7
1,437,782	-		Psyr_1271	0.20	+1.2
1,437,910	+		Psyr_1271	0.42	-0.3
1,437,910	+		Psyr_1271	0.42	-0.4
1,437,910	+		Psyr_1271	0.42	+0.4
1,437,910	+		Psyr_1271	0.42	+0.4
1,437,910	+		Psyr_1271	0.42	-1.4
1,437,910	+		Psyr_1271	0.42	+0.4
1,437,910	+		Psyr_1271	0.42	+0.9
1,437,911	-		Psyr_1271	0.42	+1.6
1,437,911	-				-2.2
1,437,911	-		Psyr_1271	0.42	+2.0
1,437,911	-		Psyr_1271	0.42	-0.7
1,437,911	-		Psyr_1271	0.42	-1.4
1,437,911	-		Psyr_1271	0.42	+0.9
1,437,927	-		Psyr_1271	0.45	+1.1