Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0979

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
1,110,845	-				-0.8
1,110,899	+				-0.1
1,110,899	+				-0.9
1,110,900	-				+1.3
1,111,000	+				+0.2
1,111,001	-				+1.4
1,111,001	-				+0.3
1,111,011	-				-0.1
1,111,012	+				-1.1
1,111,012	+				+1.6
1,111,012	+				-0.9
1,111,013	-				+0.2
1,111,013	-				-1.2
1,111,013	-				-0.6
1,111,013	-				-0.7
1,111,013	-				-0.6
1,111,087	+				-0.6
1,111,088	-				+0.1
1,111,249	-		Psyr_0978	0.34	+0.3
1,111,399	-		Psyr_0978	0.59	+0.1
1,111,399	-		Psyr_0978	0.59	+0.5
1,111,422	+		Psyr_0978	0.63	-0.2
1,111,422	+		Psyr_0978	0.63	-0.3
1,111,422	+		Psyr_0978	0.63	+1.2
1,111,423	-		Psyr_0978	0.64	-1.0
1,111,423	-		Psyr_0978	0.64	+1.0
1,111,423	-		Psyr_0978	0.64	-0.8
1,111,423	-		Psyr_0978	0.64	+1.5
1,111,423	-		Psyr_0978	0.64	+0.3
1,111,485	+		Psyr_0978	0.74	-0.0
1,111,485	+		Psyr_0978	0.74	+0.1
1,111,485	+		Psyr_0978	0.74	+0.8
1,111,485	+		Psyr_0978	0.74	-0.8
1,111,485	+		Psyr_0978	0.74	+0.7
1,111,485	+		Psyr_0978	0.74	-2.1
1,111,485	+		Psyr_0978	0.74	+1.6
1,111,486	-		Psyr_0978	0.74	+0.2
1,111,486	-		Psyr_0978	0.74	+1.8
1,111,486	-		Psyr_0978	0.74	-1.2
1,111,486	-		Psyr_0978	0.74	+1.5
1,111,709	-				+1.2
1,111,709	-				+1.8
1,111,726	+				-2.1
1,111,726	+				+0.2
1,111,804	+		Psyr_0979	0.45	-1.0
1,111,805	-		Psyr_0979	0.46	-1.9
1,111,885	+		Psyr_0979	0.85	+1.2
1,111,885	+		Psyr_0979	0.85	-2.2
1,111,886	-		Psyr_0979	0.85	+1.0
1,111,886	-		Psyr_0979	0.85	-2.0
1,111,975	+				-0.2
1,111,975	+				+1.3
1,111,975	+				+1.0
1,111,975	+				+0.0
1,111,975	+				+0.5
1,111,976	-				+0.8
1,111,976	-				-1.0
1,111,976	-				+0.6
1,111,976	-				+0.3
1,112,031	-				-0.5
1,112,076	+				-0.3
1,112,076	+				+1.7
1,112,077	-				-0.1
1,112,077	-				-0.2
1,112,077	-				+0.4
1,112,077	-				-0.4
1,112,077	-				-1.2
1,112,199	+				+0.6
1,112,199	+				-0.4
1,112,199	+				+0.2
1,112,200	-				+0.2
1,112,200	-				+1.4
1,112,200	-				-0.1