Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0787

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
893,763	+		Psyr_0786	0.56	-0.5
893,764	-		Psyr_0786	0.56	+0.5
893,810	+		Psyr_0786	0.58	-0.5
893,845	+		Psyr_0786	0.60	+0.3
893,845	+		Psyr_0786	0.60	+1.2
893,845	+		Psyr_0786	0.60	-0.6
893,845	+		Psyr_0786	0.60	-0.2
893,846	-		Psyr_0786	0.60	-0.9
893,846	-		Psyr_0786	0.60	+0.6
894,214	+		Psyr_0786	0.77	-0.0
894,214	+		Psyr_0786	0.77	+0.3
894,214	+		Psyr_0786	0.77	+0.7
894,214	+		Psyr_0786	0.77	+1.4
894,215	-		Psyr_0786	0.77	+0.8
894,215	-				+1.3
894,215	-		Psyr_0786	0.77	-0.7
894,509	-				+0.4
894,682	+				+0.7
894,682	+				-0.7
894,683	-				+0.9
894,683	-				+1.2
894,683	-				+1.7
894,683	-				+0.2
894,685	+				-0.2
894,685	+				-0.5
894,685	+				+0.5
894,686	-				-0.8
894,686	-				+0.2
894,722	-				-0.3
894,739	+				+0.7
894,758	+				+1.1
894,758	+				-1.2
894,758	+				-0.2
894,758	+				-0.7
894,758	+				-1.2
894,758	+				+2.3
894,758	+				-1.5
894,758	+				+2.3
894,759	-				+1.1
894,759	-				+0.5
894,759	-				-1.6
894,759	-				+0.5
894,762	+				+0.1
894,762	+				+0.9
894,762	+				+0.6
894,763	-				-2.6
894,763	-				-0.0
894,763	-				-0.2
894,961	+		Psyr_0787	0.77	+0.7
894,961	+		Psyr_0787	0.77	+1.4
894,961	+		Psyr_0787	0.77	+0.8
894,962	-		Psyr_0787	0.77	+1.5
894,962	-		Psyr_0787	0.77	+0.6
894,962	-		Psyr_0787	0.77	+0.3
894,962	-		Psyr_0787	0.77	-0.7
894,962	-		Psyr_0787	0.77	+0.0
894,962	-		Psyr_0787	0.77	+1.1
894,962	-		Psyr_0787	0.77	-0.4
894,962	-		Psyr_0787	0.77	+0.7
894,982	-		Psyr_0787	0.84	+1.4
894,982	-		Psyr_0787	0.84	+0.8
894,982	-		Psyr_0787	0.84	-0.0
895,200	+		Psyr_0788	0.40	-0.6
895,200	+		Psyr_0788	0.40	+0.2
895,200	+		Psyr_0788	0.40	+0.5
895,200	+		Psyr_0788	0.40	-2.1
895,200	+		Psyr_0788	0.40	+0.9
895,200	+		Psyr_0788	0.40	-1.5
895,200	+		Psyr_0788	0.40	-0.4
895,201	-		Psyr_0788	0.40	-0.3
895,201	-		Psyr_0788	0.40	-0.2
895,201	-		Psyr_0788	0.40	-0.5
895,341	+		Psyr_0788	0.78	-0.3
895,406	+				+0.0
895,406	+				+1.2
895,407	-				+1.0
895,407	-				+0.6
895,407	-				+1.2
895,407	-				+2.6
895,407	-				+1.2
895,407	-				-0.3
895,415	-				-0.2
895,425	+				+0.2
895,425	+				-0.6
895,425	+				-0.3
895,425	+				-1.4
895,426	-				-0.2
895,426	-				-0.4
895,426	-				+1.0
895,426	-				+0.1
895,426	-				+0.2
895,509	+				+2.3
895,509	+				+0.4
895,510	-				+0.3
895,513	+				+2.0
895,514	-				-0.3
895,514	-				+0.2
895,514	-				-0.0
895,619	+		Psyr_0789	0.16	-1.3
895,620	-		Psyr_0789	0.16	+0.2
895,620	-		Psyr_0789	0.16	+0.2
895,699	-		Psyr_0789	0.22	-0.3
895,766	+		Psyr_0789	0.28	-0.3
895,766	+		Psyr_0789	0.28	+0.3
895,766	+		Psyr_0789	0.28	-0.9
895,767	-		Psyr_0789	0.28	-0.3
895,767	-		Psyr_0789	0.28	+2.0
895,767	-		Psyr_0789	0.28	+0.3