Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0722 and Psyr_0723 are separated by 2 nucleotides Psyr_0723 and Psyr_0724 overlap by 11 nucleotides Psyr_0724 and Psyr_0725 are separated by 120 nucleotides
Psyr_0722: Psyr_0722 - Two-component response regulator PilR, at 826,013 to 827,350
_0722
Psyr_0723: Psyr_0723 - Sensor protein PilS, at 827,353 to 828,945
_0723
Psyr_0724: Psyr_0724 - conserved hypothetical protein, at 828,935 to 829,174
_0724
Psyr_0725: Psyr_0725 - competence lipoprotein ComL, putative, at 829,295 to 830,317
_0725
Position (kb) 827
828
829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 826.473 kb on + strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.835 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.921 kb on + strand, within Psyr_0722 at 826.921 kb on + strand, within Psyr_0722 at 826.922 kb on - strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.141 kb on + strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.142 kb on - strand, within Psyr_0722 at 827.324 kb on + strand at 827.382 kb on + strand at 827.382 kb on + strand at 827.383 kb on - strand at 827.383 kb on - strand at 827.383 kb on - strand at 827.383 kb on - strand at 827.421 kb on - strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.465 kb on + strand at 827.466 kb on - strand at 827.466 kb on - strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.467 kb on + strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.468 kb on - strand at 827.599 kb on + strand, within Psyr_0723 at 827.600 kb on - strand, within Psyr_0723 at 827.600 kb on - strand, within Psyr_0723 at 827.642 kb on + strand, within Psyr_0723 at 827.642 kb on + strand, within Psyr_0723 at 827.865 kb on + strand, within Psyr_0723 at 827.941 kb on - strand, within Psyr_0723 at 827.983 kb on + strand, within Psyr_0723 at 827.984 kb on - strand, within Psyr_0723 at 827.984 kb on - strand, within Psyr_0723 at 827.984 kb on - strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.268 kb on + strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.269 kb on - strand, within Psyr_0723 at 828.401 kb on - strand, within Psyr_0723 at 828.401 kb on - strand, within Psyr_0723 at 828.489 kb on - strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.524 kb on + strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.525 kb on - strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.536 kb on + strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.537 kb on - strand, within Psyr_0723 at 828.662 kb on + strand, within Psyr_0723 at 828.662 kb on + strand, within Psyr_0723 at 828.668 kb on - strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.770 kb on + strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.771 kb on - strand, within Psyr_0723 at 828.856 kb on + strand at 828.856 kb on + strand at 828.856 kb on + strand at 828.856 kb on + strand at 828.856 kb on + strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.857 kb on - strand at 828.878 kb on + strand at 828.887 kb on + strand at 828.887 kb on + strand at 828.887 kb on + strand at 828.888 kb on - strand at 828.888 kb on - strand at 828.888 kb on - strand at 828.895 kb on + strand at 828.895 kb on + strand at 828.896 kb on - strand at 828.984 kb on + strand, within Psyr_0724 at 828.984 kb on + strand, within Psyr_0724 at 828.985 kb on - strand, within Psyr_0724 at 828.985 kb on - strand, within Psyr_0724 at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.159 kb on + strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.160 kb on - strand at 829.163 kb on + strand at 829.163 kb on + strand at 829.163 kb on + strand at 829.164 kb on - strand at 829.164 kb on - strand at 829.164 kb on - strand at 829.186 kb on + strand at 829.209 kb on + strand at 829.245 kb on - strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.320 kb on + strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.321 kb on - strand at 829.599 kb on + strand, within Psyr_0725
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 826,473 + Psyr_0722 0.34 -0.1 826,474 - Psyr_0722 0.34 -0.3 826,474 - Psyr_0722 0.34 +0.5 826,474 - Psyr_0722 0.34 +0.7 826,474 - Psyr_0722 0.34 +0.4 826,474 - Psyr_0722 0.34 +1.6 826,474 - Psyr_0722 0.34 +1.2 826,835 + Psyr_0722 0.61 -1.3 826,872 + Psyr_0722 0.64 +0.3 826,872 + Psyr_0722 0.64 -0.3 826,872 + Psyr_0722 0.64 -0.0 826,872 + Psyr_0722 0.64 -1.0 826,873 - Psyr_0722 0.64 -0.2 826,873 - Psyr_0722 0.64 +0.2 826,873 - Psyr_0722 0.64 -0.8 826,873 - Psyr_0722 0.64 -0.5 826,921 + Psyr_0722 0.68 +1.1 826,921 + Psyr_0722 0.68 -0.8 826,922 - Psyr_0722 0.68 +1.3 827,141 + Psyr_0722 0.84 -1.0 827,141 + Psyr_0722 0.84 -1.4 827,141 + Psyr_0722 0.84 +0.7 827,141 + Psyr_0722 0.84 -0.1 827,141 + Psyr_0722 0.84 -0.3 827,141 + Psyr_0722 0.84 -0.6 827,141 + Psyr_0722 0.84 -0.8 827,141 + Psyr_0722 0.84 -0.4 827,141 + Psyr_0722 0.84 -0.3 827,141 + Psyr_0722 0.84 -0.0 827,141 + Psyr_0722 0.84 +0.2 827,141 + Psyr_0722 0.84 -0.4 827,141 + Psyr_0722 0.84 +0.2 827,141 + Psyr_0722 0.84 +0.4 827,142 - Psyr_0722 0.84 -0.3 827,142 - Psyr_0722 0.84 -0.7 827,142 - Psyr_0722 0.84 -1.0 827,142 - Psyr_0722 0.84 -0.2 827,142 - Psyr_0722 0.84 +0.1 827,142 - Psyr_0722 0.84 -0.9 827,142 - Psyr_0722 0.84 -0.1 827,142 - Psyr_0722 0.84 +1.3 827,142 - Psyr_0722 0.84 +0.3 827,142 - Psyr_0722 0.84 +0.4 827,324 + -0.6 827,382 + -1.6 827,382 + -0.4 827,383 - +0.7 827,383 - +2.2 827,383 - -0.6 827,383 - +1.5 827,421 - +0.6 827,465 + -0.7 827,465 + -0.4 827,465 + -1.2 827,465 + -0.2 827,465 + -0.3 827,465 + +0.2 827,466 - -0.5 827,466 - -0.1 827,467 + -0.6 827,467 + -0.2 827,467 + +1.2 827,467 + +0.2 827,467 + +0.5 827,467 + +0.1 827,467 + +0.1 827,467 + +1.2 827,467 + +1.1 827,467 + +1.2 827,467 + -0.3 827,467 + +1.5 827,467 + -0.9 827,467 + +0.1 827,467 + -1.3 827,467 + -0.5 827,467 + +0.6 827,468 - +0.7 827,468 - +0.1 827,468 - +0.7 827,468 - -2.3 827,468 - +0.7 827,468 - -0.1 827,468 - -0.7 827,468 - +0.1 827,599 + Psyr_0723 0.15 -1.9 827,600 - Psyr_0723 0.16 +0.6 827,600 - Psyr_0723 0.16 -0.7 827,642 + Psyr_0723 0.18 -0.1 827,642 + Psyr_0723 0.18 +0.1 827,865 + Psyr_0723 0.32 +1.1 827,941 - Psyr_0723 0.37 +2.1 827,983 + Psyr_0723 0.40 +0.3 827,984 - Psyr_0723 0.40 -0.0 827,984 - Psyr_0723 0.40 -1.4 827,984 - Psyr_0723 0.40 -1.4 828,268 + Psyr_0723 0.57 -0.4 828,268 + Psyr_0723 0.57 -0.1 828,268 + Psyr_0723 0.57 +0.4 828,269 - Psyr_0723 0.58 +1.6 828,269 - Psyr_0723 0.58 +0.7 828,269 - Psyr_0723 0.58 +0.9 828,269 - Psyr_0723 0.58 -0.1 828,401 - Psyr_0723 0.66 -0.3 828,401 - Psyr_0723 0.66 -0.2 828,489 - Psyr_0723 0.71 -0.3 828,524 + Psyr_0723 0.74 -0.8 828,524 + Psyr_0723 0.74 +1.7 828,524 + Psyr_0723 0.74 +0.1 828,524 + Psyr_0723 0.74 +0.7 828,524 + Psyr_0723 0.74 -0.0 828,524 + Psyr_0723 0.74 +0.7 828,525 - Psyr_0723 0.74 -1.0 828,525 - Psyr_0723 0.74 +0.1 828,525 - Psyr_0723 0.74 +0.4 828,525 - Psyr_0723 0.74 +0.3 828,525 - Psyr_0723 0.74 -1.0 828,525 - Psyr_0723 0.74 -0.7 828,525 - Psyr_0723 0.74 -0.1 828,525 - Psyr_0723 0.74 +1.0 828,525 - Psyr_0723 0.74 +0.1 828,525 - Psyr_0723 0.74 +0.7 828,525 - Psyr_0723 0.74 +0.7 828,536 + Psyr_0723 0.74 -0.5 828,536 + Psyr_0723 0.74 +0.4 828,536 + Psyr_0723 0.74 +0.7 828,536 + Psyr_0723 0.74 +1.7 828,536 + Psyr_0723 0.74 -0.1 828,536 + Psyr_0723 0.74 +1.8 828,537 - Psyr_0723 0.74 +0.7 828,537 - Psyr_0723 0.74 +0.7 828,537 - Psyr_0723 0.74 +0.9 828,537 - Psyr_0723 0.74 +2.7 828,537 - Psyr_0723 0.74 -1.3 828,537 - Psyr_0723 0.74 +0.5 828,537 - Psyr_0723 0.74 +0.2 828,537 - Psyr_0723 0.74 -2.3 828,537 - Psyr_0723 0.74 +0.2 828,662 + Psyr_0723 0.82 +0.8 828,662 + Psyr_0723 0.82 -0.2 828,668 - Psyr_0723 0.83 -0.2 828,770 + Psyr_0723 0.89 +0.1 828,770 + Psyr_0723 0.89 +0.7 828,770 + Psyr_0723 0.89 -0.0 828,770 + Psyr_0723 0.89 -0.1 828,770 + Psyr_0723 0.89 +1.5 828,770 + Psyr_0723 0.89 +0.1 828,771 - Psyr_0723 0.89 -1.3 828,771 - Psyr_0723 0.89 +0.1 828,771 - Psyr_0723 0.89 -0.3 828,771 - Psyr_0723 0.89 -0.2 828,771 - Psyr_0723 0.89 +0.1 828,856 + +1.1 828,856 + +0.0 828,856 + +0.7 828,856 + -0.8 828,856 + +0.5 828,857 - -0.7 828,857 - +1.7 828,857 - +2.3 828,857 - +0.6 828,857 - -0.7 828,878 + +0.8 828,887 + +2.1 828,887 + +3.5 828,887 + -0.3 828,888 - -0.0 828,888 - +0.3 828,888 - +0.3 828,895 + -0.3 828,895 + -0.3 828,896 - +1.5 828,984 + Psyr_0724 0.20 -1.8 828,984 + Psyr_0724 0.20 -0.3 828,985 - Psyr_0724 0.21 -3.0 828,985 - Psyr_0724 0.21 -0.5 829,159 + +0.4 829,159 + -0.5 829,159 + +0.1 829,159 + -0.9 829,159 + -0.2 829,159 + +0.4 829,159 + +0.5 829,159 + +0.3 829,159 + +0.4 829,159 + -2.1 829,159 + +0.1 829,159 + -0.9 829,159 + -0.6 829,159 + -0.7 829,159 + +0.8 829,159 + +0.3 829,159 + +0.8 829,159 + +0.7 829,159 + -0.1 829,159 + -0.3 829,160 - -0.3 829,160 - -0.5 829,160 - -1.2 829,160 - -0.3 829,160 - -0.1 829,160 - -0.3 829,160 - +0.3 829,160 - +0.3 829,160 - -0.8 829,160 - +0.8 829,160 - -0.3 829,160 - +0.7 829,160 - +1.3 829,160 - -0.8 829,160 - -0.1 829,160 - -1.2 829,160 - -0.6 829,160 - +0.6 829,160 - -0.5 829,163 + -0.0 829,163 + +0.5 829,163 + +0.4 829,164 - +1.7 829,164 - +0.3 829,164 - +1.3 829,186 + +0.3 829,209 + -0.6 829,245 - +0.4 829,320 + -0.0 829,320 + -0.5 829,320 + -0.9 829,320 + +2.3 829,320 + -0.5 829,320 + +0.1 829,320 + +0.3 829,320 + +1.1 829,320 + -0.9 829,320 + -2.1 829,320 + +0.7 829,321 - +1.1 829,321 - -0.4 829,321 - +2.7 829,321 - +0.5 829,321 - -0.6 829,321 - -1.1 829,321 - +0.2 829,321 - +0.4 829,321 - +0.4 829,321 - -0.8 829,321 - +1.1 829,321 - -0.3 829,599 + Psyr_0725 0.30 -0.3
Or see this region's nucleotide sequence