Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0714

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0713 and Psyr_0714 are separated by 6 nucleotidesPsyr_0714 and Psyr_0715 are separated by 131 nucleotidesPsyr_0715 and Psyr_0716 overlap by 1 nucleotides Psyr_0713: Psyr_0713 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 817,378 to 818,325 _0713 Psyr_0714: Psyr_0714 - type IV pilus biogenesis protein, at 818,332 to 818,832 _0714 Psyr_0715: Psyr_0715 - pillin, putative, at 818,964 to 819,437 _0715 Psyr_0716: Psyr_0716 - type IV pilus assembly protein PilV, at 819,437 to 819,952 _0716 Position (kb) 818 819Strain fitness (log2 ratio) -2 -1 0 1 2 3at 818.330 kb on - strandat 818.396 kb on - strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.434 kb on + strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.435 kb on - strand, within Psyr_0714at 818.535 kb on + strand, within Psyr_0714at 818.548 kb on + strand, within Psyr_0714at 818.549 kb on - strand, within Psyr_0714at 818.549 kb on - strand, within Psyr_0714at 818.549 kb on - strand, within Psyr_0714at 818.549 kb on - strand, within Psyr_0714at 818.549 kb on - strand, within Psyr_0714at 818.596 kb on + strand, within Psyr_0714at 818.596 kb on + strand, within Psyr_0714at 818.597 kb on - strand, within Psyr_0714at 818.597 kb on - strand, within Psyr_0714at 818.597 kb on - strand, within Psyr_0714at 818.800 kb on + strandat 818.800 kb on + strandat 818.832 kb on + strandat 818.898 kb on + strandat 818.898 kb on + strandat 818.898 kb on + strandat 818.899 kb on - strandat 818.899 kb on - strandat 818.936 kb on + strandat 818.936 kb on + strandat 818.936 kb on + strandat 818.937 kb on - strandat 818.937 kb on - strandat 818.938 kb on + strandat 818.938 kb on + strandat 818.938 kb on + strandat 818.938 kb on + strandat 818.939 kb on - strandat 818.939 kb on - strandat 818.939 kb on - strandat 818.939 kb on - strandat 818.939 kb on - strandat 818.951 kb on + strandat 818.972 kb on + strandat 818.972 kb on + strandat 818.973 kb on - strandat 818.973 kb on - strandat 818.973 kb on - strandat 818.973 kb on - strandat 818.973 kb on - strandat 818.973 kb on - strandat 818.974 kb on + strandat 818.974 kb on + strandat 818.974 kb on + strandat 818.974 kb on + strandat 818.974 kb on + strandat 818.974 kb on + strandat 818.975 kb on - strandat 818.975 kb on - strandat 819.004 kb on + strandat 819.044 kb on + strand, within Psyr_0715at 819.120 kb on + strand, within Psyr_0715at 819.120 kb on + strand, within Psyr_0715at 819.120 kb on + strand, within Psyr_0715at 819.120 kb on + strand, within Psyr_0715at 819.121 kb on - strand, within Psyr_0715at 819.121 kb on - strand, within Psyr_0715at 819.121 kb on - strand, within Psyr_0715at 819.121 kb on - strand, within Psyr_0715at 819.121 kb on - strand, within Psyr_0715at 819.121 kb on - strand, within Psyr_0715at 819.207 kb on + strand, within Psyr_0715at 819.207 kb on + strand, within Psyr_0715at 819.207 kb on + strand, within Psyr_0715at 819.207 kb on + strand, within Psyr_0715at 819.207 kb on + strand, within Psyr_0715at 819.207 kb on + strand, within Psyr_0715at 819.207 kb on + strand, within Psyr_0715at 819.207 kb on + strand, within Psyr_0715at 819.207 kb on + strand, within Psyr_0715at 819.208 kb on - strand, within Psyr_0715at 819.208 kb on - strand, within Psyr_0715at 819.208 kb on - strand, within Psyr_0715at 819.208 kb on - strand, within Psyr_0715at 819.363 kb on + strand, within Psyr_0715at 819.363 kb on + strand, within Psyr_0715at 819.363 kb on + strand, within Psyr_0715at 819.364 kb on - strand, within Psyr_0715at 819.364 kb on - strand, within Psyr_0715at 819.364 kb on - strand, within Psyr_0715at 819.364 kb on - strand, within Psyr_0715at 819.364 kb on - strand, within Psyr_0715at 819.391 kb on + strandat 819.392 kb on - strandat 819.392 kb on - strandat 819.557 kb on + strand, within Psyr_0716at 819.557 kb on + strand, within Psyr_0716at 819.558 kb on - strand, within Psyr_0716at 819.558 kb on - strand, within Psyr_0716at 819.558 kb on - strand, within Psyr_0716at 819.602 kb on + strand, within Psyr_0716at 819.640 kb on + strand, within Psyr_0716at 819.640 kb on + strand, within Psyr_0716at 819.641 kb on - strand, within Psyr_0716at 819.669 kb on + strand, within Psyr_0716at 819.669 kb on + strand, within Psyr_0716at 819.670 kb on - strand, within Psyr_0716at 819.676 kb on + strand, within Psyr_0716at 819.676 kb on + strand, within Psyr_0716at 819.676 kb on + strand, within Psyr_0716at 819.677 kb on - strand, within Psyr_0716at 819.680 kb on + strand, within Psyr_0716at 819.680 kb on + strand, within Psyr_0716at 819.680 kb on + strand, within Psyr_0716at 819.680 kb on + strand, within Psyr_0716at 819.680 kb on + strand, within Psyr_0716at 819.681 kb on - strand, within Psyr_0716at 819.681 kb on - strand, within Psyr_0716at 819.681 kb on - strand, within Psyr_0716at 819.681 kb on - strand, within Psyr_0716at 819.681 kb on - strand, within Psyr_0716at 819.682 kb on + strand, within Psyr_0716at 819.682 kb on + strand, within Psyr_0716at 819.683 kb on - strand, within Psyr_0716at 819.683 kb on - strand, within Psyr_0716at 819.683 kb on - strand, within Psyr_0716at 819.683 kb on - strand, within Psyr_0716at 819.683 kb on - strand, within Psyr_0716at 819.683 kb on - strand, within Psyr_0716at 819.683 kb on - strand, within Psyr_0716at 819.817 kb on + strand, within Psyr_0716at 819.817 kb on + strand, within Psyr_0716at 819.817 kb on + strand, within Psyr_0716at 819.817 kb on + strand, within Psyr_0716at 819.817 kb on + strand, within Psyr_0716at 819.818 kb on - strand, within Psyr_0716at 819.818 kb on - strand, within Psyr_0716at 819.818 kb on - strand, within Psyr_0716at 819.818 kb on - strand, within Psyr_0716at 819.818 kb on - strand, within Psyr_0716

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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818,330 - -0.9
818,396 - Psyr_0714 0.13 +0.8
818,434 + Psyr_0714 0.20 +0.3
818,434 + Psyr_0714 0.20 -0.7
818,434 + Psyr_0714 0.20 -0.9
818,434 + Psyr_0714 0.20 +0.1
818,434 + Psyr_0714 0.20 +0.3
818,434 + Psyr_0714 0.20 +0.4
818,434 + Psyr_0714 0.20 -0.8
818,434 + Psyr_0714 0.20 -0.1
818,434 + Psyr_0714 0.20 +1.2
818,434 + Psyr_0714 0.20 +2.8
818,434 + Psyr_0714 0.20 -2.2
818,434 + Psyr_0714 0.20 -1.3
818,434 + Psyr_0714 0.20 -1.7
818,434 + Psyr_0714 0.20 -0.8
818,435 - Psyr_0714 0.21 -1.1
818,435 - Psyr_0714 0.21 +0.0
818,435 - Psyr_0714 0.21 +1.8
818,435 - Psyr_0714 0.21 -0.1
818,435 - Psyr_0714 0.21 -0.2
818,435 - Psyr_0714 0.21 +0.8
818,435 - Psyr_0714 0.21 -0.1
818,435 - Psyr_0714 0.21 -0.3
818,435 - Psyr_0714 0.21 +1.2
818,435 - Psyr_0714 0.21 -0.6
818,435 - Psyr_0714 0.21 +0.8
818,435 - Psyr_0714 0.21 +0.8
818,435 - Psyr_0714 0.21 +0.4
818,435 - Psyr_0714 0.21 +0.2
818,435 - Psyr_0714 0.21 -0.1
818,435 - Psyr_0714 0.21 -0.5
818,535 + Psyr_0714 0.41 +0.1
818,548 + Psyr_0714 0.43 +1.6
818,549 - Psyr_0714 0.43 +0.0
818,549 - Psyr_0714 0.43 -1.5
818,549 - Psyr_0714 0.43 -0.7
818,549 - Psyr_0714 0.43 +0.9
818,549 - Psyr_0714 0.43 -0.4
818,596 + Psyr_0714 0.53 -0.5
818,596 + Psyr_0714 0.53 -0.3
818,597 - Psyr_0714 0.53 -0.1
818,597 - Psyr_0714 0.53 +0.3
818,597 - Psyr_0714 0.53 +0.3
818,800 + +0.6
818,800 + -0.2
818,832 + -0.2
818,898 + +0.2
818,898 + +0.8
818,898 + -0.5
818,899 - +0.5
818,899 - +0.2
818,936 + +0.7
818,936 + +0.8
818,936 + +2.3
818,937 - -1.2
818,937 - -0.6
818,938 + +0.9
818,938 + +0.8
818,938 + -0.2
818,938 + -1.2
818,939 - -1.7
818,939 - -2.2
818,939 - -0.7
818,939 - -1.9
818,939 - -1.1
818,951 + -1.8
818,972 + +0.1
818,972 + -0.5
818,973 - +0.0
818,973 - -0.6
818,973 - +0.4
818,973 - -1.2
818,973 - +0.8
818,973 - +0.6
818,974 + +0.8
818,974 + -0.6
818,974 + -0.1
818,974 + +1.1
818,974 + -0.6
818,974 + -0.2
818,975 - -0.2
818,975 - +0.8
819,004 + +1.3
819,044 + Psyr_0715 0.17 +0.6
819,120 + Psyr_0715 0.33 +0.2
819,120 + Psyr_0715 0.33 +1.8
819,120 + Psyr_0715 0.33 +0.2
819,120 + Psyr_0715 0.33 +1.3
819,121 - Psyr_0715 0.33 -1.6
819,121 - Psyr_0715 0.33 +0.8
819,121 - Psyr_0715 0.33 +0.5
819,121 - Psyr_0715 0.33 +0.6
819,121 - Psyr_0715 0.33 +2.0
819,121 - Psyr_0715 0.33 -1.0
819,207 + Psyr_0715 0.51 -0.6
819,207 + Psyr_0715 0.51 -0.1
819,207 + Psyr_0715 0.51 +1.1
819,207 + Psyr_0715 0.51 -1.1
819,207 + Psyr_0715 0.51 +0.9
819,207 + Psyr_0715 0.51 -0.2
819,207 + Psyr_0715 0.51 -0.0
819,207 + Psyr_0715 0.51 -0.6
819,207 + Psyr_0715 0.51 +1.0
819,208 - Psyr_0715 0.51 +0.3
819,208 - Psyr_0715 0.51 +0.1
819,208 - Psyr_0715 0.51 -0.1
819,208 - Psyr_0715 0.51 +0.1
819,363 + Psyr_0715 0.84 +0.2
819,363 + Psyr_0715 0.84 -1.9
819,363 + Psyr_0715 0.84 -0.6
819,364 - Psyr_0715 0.84 +0.5
819,364 - Psyr_0715 0.84 +0.3
819,364 - Psyr_0715 0.84 +0.8
819,364 - Psyr_0715 0.84 -0.8
819,364 - Psyr_0715 0.84 +0.4
819,391 + +0.3
819,392 - -0.8
819,392 - -0.2
819,557 + Psyr_0716 0.23 -1.3
819,557 + Psyr_0716 0.23 +0.6
819,558 - Psyr_0716 0.23 -1.8
819,558 - Psyr_0716 0.23 +0.3
819,558 - Psyr_0716 0.23 -0.3
819,602 + Psyr_0716 0.32 +0.7
819,640 + Psyr_0716 0.39 +0.1
819,640 + Psyr_0716 0.39 +0.7
819,641 - Psyr_0716 0.40 +0.1
819,669 + Psyr_0716 0.45 +0.7
819,669 + Psyr_0716 0.45 +0.6
819,670 - Psyr_0716 0.45 +0.9
819,676 + Psyr_0716 0.46 +0.5
819,676 + Psyr_0716 0.46 -0.8
819,676 + Psyr_0716 0.46 -1.6
819,677 - Psyr_0716 0.47 -0.0
819,680 + Psyr_0716 0.47 +1.1
819,680 + Psyr_0716 0.47 +0.3
819,680 + Psyr_0716 0.47 +2.3
819,680 + Psyr_0716 0.47 +1.2
819,680 + Psyr_0716 0.47 -0.5
819,681 - Psyr_0716 0.47 -0.8
819,681 - Psyr_0716 0.47 -0.5
819,681 - Psyr_0716 0.47 +0.2
819,681 - Psyr_0716 0.47 -0.8
819,681 - Psyr_0716 0.47 -0.1
819,682 + Psyr_0716 0.47 -1.1
819,682 + Psyr_0716 0.47 -0.4
819,683 - Psyr_0716 0.48 -0.5
819,683 - Psyr_0716 0.48 +0.6
819,683 - Psyr_0716 0.48 +0.9
819,683 - Psyr_0716 0.48 +0.7
819,683 - Psyr_0716 0.48 -1.6
819,683 - Psyr_0716 0.48 -2.0
819,683 - Psyr_0716 0.48 -0.3
819,817 + Psyr_0716 0.74 +2.3
819,817 + Psyr_0716 0.74 -0.1
819,817 + Psyr_0716 0.74 +0.6
819,817 + Psyr_0716 0.74 +0.1
819,817 + Psyr_0716 0.74 -0.2
819,818 - Psyr_0716 0.74 -0.4
819,818 - Psyr_0716 0.74 -1.1
819,818 - Psyr_0716 0.74 -0.8
819,818 - Psyr_0716 0.74 +0.3
819,818 - Psyr_0716 0.74 +0.7

Or see this region's nucleotide sequence