Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0607

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0605 and Psyr_0606 overlap by 4 nucleotidesPsyr_0606 and Psyr_0607 are separated by 102 nucleotidesPsyr_0607 and Psyr_0608 are separated by 79 nucleotides Psyr_0605: Psyr_0605 - farnesyl-diphosphate synthase, at 695,679 to 696,566 _0605 Psyr_0606: Psyr_0606 - Exodeoxyribonuclease VII small subunit, at 696,563 to 696,808 _0606 Psyr_0607: Psyr_0607 - cystathionine beta-lyase, at 696,911 to 698,077 _0607 Psyr_0608: Psyr_0608 - Protein of unknown function DUF1016, at 698,157 to 699,173 _0608 Position (kb) 696 697 698 699Strain fitness (log2 ratio) -2 -1 0 1 2 3at 696.684 kb on - strand, within Psyr_0606at 696.894 kb on + strandat 696.894 kb on + strandat 697.206 kb on + strand, within Psyr_0607at 697.206 kb on + strand, within Psyr_0607at 697.320 kb on + strand, within Psyr_0607at 697.320 kb on + strand, within Psyr_0607at 697.343 kb on - strand, within Psyr_0607at 697.343 kb on - strand, within Psyr_0607at 697.375 kb on + strand, within Psyr_0607at 697.437 kb on + strand, within Psyr_0607at 697.437 kb on + strand, within Psyr_0607at 697.438 kb on - strand, within Psyr_0607at 697.438 kb on - strand, within Psyr_0607at 697.438 kb on - strand, within Psyr_0607at 697.438 kb on - strand, within Psyr_0607at 697.488 kb on + strand, within Psyr_0607at 697.488 kb on + strand, within Psyr_0607at 697.488 kb on + strand, within Psyr_0607at 697.488 kb on + strand, within Psyr_0607at 697.488 kb on + strand, within Psyr_0607at 697.488 kb on + strand, within Psyr_0607at 697.488 kb on + strand, within Psyr_0607at 697.489 kb on - strand, within Psyr_0607at 697.489 kb on - strand, within Psyr_0607at 697.489 kb on - strand, within Psyr_0607at 697.608 kb on + strand, within Psyr_0607at 697.608 kb on + strand, within Psyr_0607at 697.608 kb on + strand, within Psyr_0607at 697.608 kb on + strand, within Psyr_0607at 697.608 kb on + strand, within Psyr_0607at 697.609 kb on - strand, within Psyr_0607at 697.609 kb on - strand, within Psyr_0607at 697.609 kb on - strand, within Psyr_0607at 697.609 kb on - strand, within Psyr_0607at 697.609 kb on - strand, within Psyr_0607at 697.609 kb on - strand, within Psyr_0607at 697.649 kb on - strand, within Psyr_0607at 697.665 kb on + strand, within Psyr_0607at 697.666 kb on - strand, within Psyr_0607at 697.728 kb on + strand, within Psyr_0607at 697.728 kb on + strand, within Psyr_0607at 697.728 kb on + strand, within Psyr_0607at 697.729 kb on - strand, within Psyr_0607at 697.894 kb on - strand, within Psyr_0607at 697.969 kb on + strandat 697.969 kb on + strandat 697.969 kb on + strandat 698.132 kb on + strandat 698.132 kb on + strandat 698.133 kb on - strandat 698.133 kb on - strandat 698.155 kb on + strandat 698.155 kb on + strandat 698.155 kb on + strandat 698.185 kb on + strandat 698.211 kb on + strandat 698.212 kb on - strandat 698.212 kb on - strandat 698.281 kb on + strand, within Psyr_0608at 698.282 kb on - strand, within Psyr_0608at 698.317 kb on - strand, within Psyr_0608at 698.317 kb on - strand, within Psyr_0608at 698.317 kb on - strand, within Psyr_0608at 698.317 kb on - strand, within Psyr_0608at 698.317 kb on - strand, within Psyr_0608at 698.377 kb on + strand, within Psyr_0608at 698.377 kb on + strand, within Psyr_0608at 698.377 kb on + strand, within Psyr_0608at 698.399 kb on - strand, within Psyr_0608at 698.541 kb on + strand, within Psyr_0608at 698.542 kb on - strand, within Psyr_0608at 698.633 kb on + strand, within Psyr_0608at 698.633 kb on + strand, within Psyr_0608at 698.634 kb on - strand, within Psyr_0608at 698.634 kb on - strand, within Psyr_0608at 698.634 kb on - strand, within Psyr_0608at 698.634 kb on - strand, within Psyr_0608at 698.634 kb on - strand, within Psyr_0608at 698.634 kb on - strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.635 kb on + strand, within Psyr_0608at 698.636 kb on - strand, within Psyr_0608at 698.636 kb on - strand, within Psyr_0608at 698.636 kb on - strand, within Psyr_0608at 698.636 kb on - strand, within Psyr_0608at 698.636 kb on - strand, within Psyr_0608at 698.636 kb on - strand, within Psyr_0608at 698.636 kb on - strand, within Psyr_0608at 698.649 kb on + strand, within Psyr_0608at 698.649 kb on + strand, within Psyr_0608at 698.649 kb on + strand, within Psyr_0608at 698.649 kb on + strand, within Psyr_0608at 698.649 kb on + strand, within Psyr_0608at 698.649 kb on + strand, within Psyr_0608at 698.649 kb on + strand, within Psyr_0608at 698.650 kb on - strand, within Psyr_0608at 698.650 kb on - strand, within Psyr_0608at 698.650 kb on - strand, within Psyr_0608at 698.650 kb on - strand, within Psyr_0608at 698.650 kb on - strand, within Psyr_0608at 698.651 kb on + strand, within Psyr_0608at 698.651 kb on + strand, within Psyr_0608at 698.652 kb on - strand, within Psyr_0608at 698.652 kb on - strand, within Psyr_0608at 698.652 kb on - strand, within Psyr_0608at 698.724 kb on + strand, within Psyr_0608at 698.840 kb on + strand, within Psyr_0608at 698.840 kb on + strand, within Psyr_0608at 698.840 kb on + strand, within Psyr_0608at 698.840 kb on + strand, within Psyr_0608at 698.840 kb on + strand, within Psyr_0608at 698.840 kb on + strand, within Psyr_0608at 698.841 kb on - strand, within Psyr_0608at 698.841 kb on - strand, within Psyr_0608at 698.853 kb on + strand, within Psyr_0608at 698.854 kb on - strand, within Psyr_0608at 698.854 kb on - strand, within Psyr_0608at 698.894 kb on - strand, within Psyr_0608at 698.903 kb on - strand, within Psyr_0608at 699.034 kb on + strand, within Psyr_0608at 699.034 kb on + strand, within Psyr_0608at 699.034 kb on + strand, within Psyr_0608at 699.035 kb on - strand, within Psyr_0608at 699.035 kb on - strand, within Psyr_0608at 699.035 kb on - strand, within Psyr_0608at 699.035 kb on - strand, within Psyr_0608at 699.053 kb on - strand, within Psyr_0608

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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696,684 - Psyr_0606 0.49 -1.7
696,894 + +0.3
696,894 + -1.5
697,206 + Psyr_0607 0.25 +1.4
697,206 + Psyr_0607 0.25 -0.1
697,320 + Psyr_0607 0.35 -1.2
697,320 + Psyr_0607 0.35 +0.5
697,343 - Psyr_0607 0.37 +0.9
697,343 - Psyr_0607 0.37 +1.0
697,375 + Psyr_0607 0.40 +0.4
697,437 + Psyr_0607 0.45 +1.3
697,437 + Psyr_0607 0.45 -1.1
697,438 - Psyr_0607 0.45 +1.2
697,438 - Psyr_0607 0.45 -1.6
697,438 - Psyr_0607 0.45 +3.1
697,438 - Psyr_0607 0.45 +0.1
697,488 + Psyr_0607 0.49 -0.4
697,488 + Psyr_0607 0.49 -0.3
697,488 + Psyr_0607 0.49 -1.5
697,488 + Psyr_0607 0.49 +1.3
697,488 + Psyr_0607 0.49 +3.5
697,488 + Psyr_0607 0.49 +0.2
697,488 + Psyr_0607 0.49 +1.9
697,489 - Psyr_0607 0.50 +1.9
697,489 - Psyr_0607 0.50 +0.4
697,489 - Psyr_0607 0.50 +1.9
697,608 + Psyr_0607 0.60 -1.0
697,608 + Psyr_0607 0.60 +1.9
697,608 + Psyr_0607 0.60 -0.5
697,608 + Psyr_0607 0.60 -0.7
697,608 + Psyr_0607 0.60 +0.6
697,609 - Psyr_0607 0.60 +0.7
697,609 - Psyr_0607 0.60 +0.0
697,609 - Psyr_0607 0.60 +0.8
697,609 - Psyr_0607 0.60 +0.7
697,609 - Psyr_0607 0.60 -0.3
697,609 - Psyr_0607 0.60 -0.1
697,649 - Psyr_0607 0.63 +0.1
697,665 + Psyr_0607 0.65 -0.0
697,666 - Psyr_0607 0.65 -0.2
697,728 + Psyr_0607 0.70 -0.2
697,728 + Psyr_0607 0.70 +1.3
697,728 + Psyr_0607 0.70 -0.7
697,729 - Psyr_0607 0.70 -0.4
697,894 - Psyr_0607 0.84 -0.8
697,969 + +0.1
697,969 + -1.2
697,969 + +0.9
698,132 + +0.1
698,132 + -1.1
698,133 - +3.5
698,133 - +1.0
698,155 + -0.5
698,155 + -0.9
698,155 + +0.7
698,185 + -1.7
698,211 + -0.9
698,212 - +0.8
698,212 - -0.7
698,281 + Psyr_0608 0.12 -0.4
698,282 - Psyr_0608 0.12 +0.9
698,317 - Psyr_0608 0.16 -0.2
698,317 - Psyr_0608 0.16 -0.1
698,317 - Psyr_0608 0.16 +0.9
698,317 - Psyr_0608 0.16 +0.1
698,317 - Psyr_0608 0.16 +0.5
698,377 + Psyr_0608 0.22 +1.3
698,377 + Psyr_0608 0.22 -0.1
698,377 + Psyr_0608 0.22 +0.6
698,399 - Psyr_0608 0.24 -0.4
698,541 + Psyr_0608 0.38 -0.1
698,542 - Psyr_0608 0.38 +0.2
698,633 + Psyr_0608 0.47 +0.5
698,633 + Psyr_0608 0.47 +0.9
698,634 - Psyr_0608 0.47 -0.5
698,634 - Psyr_0608 0.47 -0.4
698,634 - Psyr_0608 0.47 +0.3
698,634 - Psyr_0608 0.47 -0.6
698,634 - Psyr_0608 0.47 +0.4
698,634 - Psyr_0608 0.47 -0.7
698,635 + Psyr_0608 0.47 +0.6
698,635 + Psyr_0608 0.47 +0.1
698,635 + Psyr_0608 0.47 -0.3
698,635 + Psyr_0608 0.47 +1.1
698,635 + Psyr_0608 0.47 -1.0
698,635 + Psyr_0608 0.47 -2.3
698,635 + Psyr_0608 0.47 +0.0
698,635 + Psyr_0608 0.47 +1.7
698,635 + Psyr_0608 0.47 -0.4
698,635 + Psyr_0608 0.47 +0.7
698,635 + Psyr_0608 0.47 -0.3
698,635 + Psyr_0608 0.47 +0.9
698,635 + Psyr_0608 0.47 +0.8
698,636 - Psyr_0608 0.47 -0.7
698,636 - Psyr_0608 0.47 +0.5
698,636 - Psyr_0608 0.47 +0.3
698,636 - Psyr_0608 0.47 +0.3
698,636 - Psyr_0608 0.47 -0.6
698,636 - Psyr_0608 0.47 +0.9
698,636 - Psyr_0608 0.47 -0.2
698,649 + Psyr_0608 0.48 +1.4
698,649 + Psyr_0608 0.48 +0.4
698,649 + Psyr_0608 0.48 +0.7
698,649 + Psyr_0608 0.48 -1.0
698,649 + Psyr_0608 0.48 +0.7
698,649 + Psyr_0608 0.48 -1.1
698,649 + Psyr_0608 0.48 +0.2
698,650 - Psyr_0608 0.48 -1.4
698,650 - Psyr_0608 0.48 +0.6
698,650 - Psyr_0608 0.48 +0.7
698,650 - Psyr_0608 0.48 +0.6
698,650 - Psyr_0608 0.48 +1.2
698,651 + Psyr_0608 0.49 +0.0
698,651 + Psyr_0608 0.49 +2.3
698,652 - Psyr_0608 0.49 -1.4
698,652 - Psyr_0608 0.49 -0.9
698,652 - Psyr_0608 0.49 -0.9
698,724 + Psyr_0608 0.56 +1.6
698,840 + Psyr_0608 0.67 +1.2
698,840 + Psyr_0608 0.67 +0.9
698,840 + Psyr_0608 0.67 +1.7
698,840 + Psyr_0608 0.67 -0.7
698,840 + Psyr_0608 0.67 +0.3
698,840 + Psyr_0608 0.67 -1.5
698,841 - Psyr_0608 0.67 +1.5
698,841 - Psyr_0608 0.67 +0.6
698,853 + Psyr_0608 0.68 -0.6
698,854 - Psyr_0608 0.69 -0.3
698,854 - Psyr_0608 0.69 -0.7
698,894 - Psyr_0608 0.72 -1.5
698,903 - Psyr_0608 0.73 +0.2
699,034 + Psyr_0608 0.86 -1.3
699,034 + Psyr_0608 0.86 +0.5
699,034 + Psyr_0608 0.86 +1.1
699,035 - Psyr_0608 0.86 +1.0
699,035 - Psyr_0608 0.86 -0.3
699,035 - Psyr_0608 0.86 -1.1
699,035 - Psyr_0608 0.86 -1.5
699,053 - Psyr_0608 0.88 +0.3

Or see this region's nucleotide sequence