Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0447

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0445 and Psyr_0446 overlap by 4 nucleotidesPsyr_0446 and Psyr_0447 overlap by 7 nucleotidesPsyr_0447 and Psyr_0448 overlap by 4 nucleotides Psyr_0445: Psyr_0445 - malonate decarboxylase, beta subunit, at 482,458 to 483,309 _0445 Psyr_0446: Psyr_0446 - Malonate decarboxylase gamma subunit, at 483,306 to 484,106 _0446 Psyr_0447: Psyr_0447 - malonate decarboxylase subunit, putative, at 484,100 to 484,741 _0447 Psyr_0448: Psyr_0448 - Acyl transferase region, at 484,738 to 485,673 _0448 Position (kb) 484 485Strain fitness (log2 ratio) -2 -1 0 1at 483.289 kb on + strandat 483.290 kb on - strandat 483.886 kb on - strandat 483.901 kb on - strand, within Psyr_0446at 484.012 kb on + strand, within Psyr_0446at 484.012 kb on + strand, within Psyr_0446at 484.012 kb on + strand, within Psyr_0446at 484.012 kb on + strand, within Psyr_0446at 484.013 kb on - strand, within Psyr_0446at 484.013 kb on - strand, within Psyr_0446at 484.298 kb on + strand, within Psyr_0447at 484.298 kb on + strand, within Psyr_0447at 484.309 kb on + strand, within Psyr_0447at 484.310 kb on - strand, within Psyr_0447at 484.978 kb on + strand, within Psyr_0448at 484.979 kb on - strand, within Psyr_0448at 484.979 kb on - strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.165 kb on + strand, within Psyr_0448at 485.165 kb on + strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.397 kb on - strand, within Psyr_0448at 485.397 kb on - strand, within Psyr_0448at 485.401 kb on + strand, within Psyr_0448at 485.402 kb on - strand, within Psyr_0448at 485.692 kb on - strandat 485.692 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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483,289 + +0.6
483,290 - -0.0
483,886 - -0.9
483,901 - Psyr_0446 0.74 -0.7
484,012 + Psyr_0446 0.88 +0.1
484,012 + Psyr_0446 0.88 +0.8
484,012 + Psyr_0446 0.88 -1.4
484,012 + Psyr_0446 0.88 -0.4
484,013 - Psyr_0446 0.88 +0.7
484,013 - Psyr_0446 0.88 -0.3
484,298 + Psyr_0447 0.31 -1.1
484,298 + Psyr_0447 0.31 -0.0
484,309 + Psyr_0447 0.33 -1.3
484,310 - Psyr_0447 0.33 -1.5
484,978 + Psyr_0448 0.26 -0.0
484,979 - Psyr_0448 0.26 -0.9
484,979 - Psyr_0448 0.26 +1.3
485,144 + Psyr_0448 0.43 -0.3
485,144 + Psyr_0448 0.43 +0.7
485,144 + Psyr_0448 0.43 -0.6
485,144 + Psyr_0448 0.43 +0.5
485,144 + Psyr_0448 0.43 -0.3
485,145 - Psyr_0448 0.43 -0.4
485,145 - Psyr_0448 0.43 +1.1
485,145 - Psyr_0448 0.43 -1.8
485,145 - Psyr_0448 0.43 -0.4
485,145 - Psyr_0448 0.43 -0.0
485,165 + Psyr_0448 0.46 +0.4
485,165 + Psyr_0448 0.46 -0.2
485,166 - Psyr_0448 0.46 +0.1
485,166 - Psyr_0448 0.46 -0.4
485,166 - Psyr_0448 0.46 -1.0
485,166 - Psyr_0448 0.46 -0.7
485,396 + Psyr_0448 0.70 +0.3
485,396 + Psyr_0448 0.70 +1.6
485,396 + Psyr_0448 0.70 +0.5
485,396 + Psyr_0448 0.70 +1.6
485,396 + Psyr_0448 0.70 +0.6
485,397 - Psyr_0448 0.70 -0.0
485,397 - Psyr_0448 0.70 +0.9
485,401 + Psyr_0448 0.71 +0.6
485,402 - Psyr_0448 0.71 +0.8
485,692 - -0.9
485,692 - -0.3

Or see this region's nucleotide sequence