Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0378

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0377 and Psyr_0378 overlap by 8 nucleotides Psyr_0377: Psyr_0377 - Periplasmic glucan biosynthesis protein, MdoG, at 402,055 to 403,983 _0377 Psyr_0378: Psyr_0378 - Glycosyl transferase, family 2, at 403,976 to 406,558 _0378 Position (kb) 403 404 405 406 407Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 402.981 kb on + strand, within Psyr_0377at 403.063 kb on + strand, within Psyr_0377at 403.063 kb on + strand, within Psyr_0377at 403.190 kb on + strand, within Psyr_0377at 403.190 kb on + strand, within Psyr_0377at 403.190 kb on + strand, within Psyr_0377at 403.191 kb on - strand, within Psyr_0377at 403.191 kb on - strand, within Psyr_0377at 403.191 kb on - strand, within Psyr_0377at 403.195 kb on + strand, within Psyr_0377at 403.571 kb on - strand, within Psyr_0377at 403.706 kb on + strand, within Psyr_0377at 403.706 kb on + strand, within Psyr_0377at 403.960 kb on + strandat 403.961 kb on - strandat 403.961 kb on - strandat 403.961 kb on - strandat 403.981 kb on + strandat 403.981 kb on + strandat 403.981 kb on + strandat 403.981 kb on + strandat 403.982 kb on - strandat 403.982 kb on - strandat 403.982 kb on - strandat 403.982 kb on - strandat 403.982 kb on - strandat 403.982 kb on - strandat 404.016 kb on - strandat 404.028 kb on + strandat 404.408 kb on + strand, within Psyr_0378at 404.409 kb on - strand, within Psyr_0378at 404.409 kb on - strand, within Psyr_0378at 404.456 kb on + strand, within Psyr_0378at 404.456 kb on + strand, within Psyr_0378at 404.457 kb on - strand, within Psyr_0378at 404.457 kb on - strand, within Psyr_0378at 404.457 kb on - strand, within Psyr_0378at 404.555 kb on + strand, within Psyr_0378at 404.556 kb on - strand, within Psyr_0378at 404.670 kb on - strand, within Psyr_0378at 404.670 kb on - strand, within Psyr_0378at 404.722 kb on + strand, within Psyr_0378at 404.722 kb on + strand, within Psyr_0378at 404.722 kb on + strand, within Psyr_0378at 404.722 kb on + strand, within Psyr_0378at 404.722 kb on + strand, within Psyr_0378at 404.723 kb on - strand, within Psyr_0378at 404.785 kb on + strand, within Psyr_0378at 404.786 kb on - strand, within Psyr_0378at 404.955 kb on + strand, within Psyr_0378at 404.955 kb on + strand, within Psyr_0378at 405.014 kb on + strand, within Psyr_0378at 405.014 kb on + strand, within Psyr_0378at 405.015 kb on - strand, within Psyr_0378at 405.015 kb on - strand, within Psyr_0378at 405.015 kb on - strand, within Psyr_0378at 405.015 kb on - strand, within Psyr_0378at 405.015 kb on - strand, within Psyr_0378at 405.015 kb on - strand, within Psyr_0378at 405.015 kb on - strand, within Psyr_0378at 405.146 kb on + strand, within Psyr_0378at 405.146 kb on + strand, within Psyr_0378at 405.146 kb on + strand, within Psyr_0378at 405.147 kb on - strand, within Psyr_0378at 405.147 kb on - strand, within Psyr_0378at 405.179 kb on + strand, within Psyr_0378at 405.180 kb on - strand, within Psyr_0378at 405.180 kb on - strand, within Psyr_0378at 405.180 kb on - strand, within Psyr_0378at 405.180 kb on - strand, within Psyr_0378at 405.180 kb on - strand, within Psyr_0378at 405.410 kb on + strand, within Psyr_0378at 405.411 kb on - strand, within Psyr_0378at 405.554 kb on + strand, within Psyr_0378at 405.554 kb on + strand, within Psyr_0378at 405.555 kb on - strand, within Psyr_0378at 405.555 kb on - strand, within Psyr_0378at 405.555 kb on - strand, within Psyr_0378at 405.635 kb on + strand, within Psyr_0378at 405.636 kb on - strand, within Psyr_0378at 406.193 kb on + strand, within Psyr_0378at 406.199 kb on + strand, within Psyr_0378at 406.199 kb on + strand, within Psyr_0378at 406.199 kb on + strand, within Psyr_0378at 406.200 kb on - strand, within Psyr_0378at 406.200 kb on - strand, within Psyr_0378at 406.200 kb on - strand, within Psyr_0378at 406.200 kb on - strand, within Psyr_0378at 406.200 kb on - strand, within Psyr_0378at 406.327 kb on + strandat 406.531 kb on + strandat 406.532 kb on - strandat 406.556 kb on + strandat 406.717 kb on - strandat 407.120 kb on + strandat 407.120 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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402,981 + Psyr_0377 0.48 +1.2
403,063 + Psyr_0377 0.52 +0.2
403,063 + Psyr_0377 0.52 -0.6
403,190 + Psyr_0377 0.59 -0.4
403,190 + Psyr_0377 0.59 -1.2
403,190 + Psyr_0377 0.59 +0.6
403,191 - Psyr_0377 0.59 +0.2
403,191 - Psyr_0377 0.59 -2.6
403,191 - Psyr_0377 0.59 -0.9
403,195 + Psyr_0377 0.59 -1.1
403,571 - Psyr_0377 0.79 +0.8
403,706 + Psyr_0377 0.86 -0.5
403,706 + Psyr_0377 0.86 -1.1
403,960 + -1.6
403,961 - -2.1
403,961 - -1.7
403,961 - -1.4
403,981 + -0.3
403,981 + +0.5
403,981 + -0.1
403,981 + +0.2
403,982 - -0.4
403,982 - -1.5
403,982 - +0.8
403,982 - -2.0
403,982 - +0.3
403,982 - -0.7
404,016 - -0.5
404,028 + -0.0
404,408 + Psyr_0378 0.17 -0.6
404,409 - Psyr_0378 0.17 -2.6
404,409 - Psyr_0378 0.17 +0.2
404,456 + Psyr_0378 0.19 -1.0
404,456 + Psyr_0378 0.19 -0.7
404,457 - Psyr_0378 0.19 -1.6
404,457 - Psyr_0378 0.19 -1.8
404,457 - Psyr_0378 0.19 +0.2
404,555 + Psyr_0378 0.22 -2.2
404,556 - Psyr_0378 0.22 -0.2
404,670 - Psyr_0378 0.27 +1.6
404,670 - Psyr_0378 0.27 -0.1
404,722 + Psyr_0378 0.29 +1.2
404,722 + Psyr_0378 0.29 -0.6
404,722 + Psyr_0378 0.29 +0.2
404,722 + Psyr_0378 0.29 -1.0
404,722 + Psyr_0378 0.29 -0.6
404,723 - Psyr_0378 0.29 +0.2
404,785 + Psyr_0378 0.31 -0.0
404,786 - Psyr_0378 0.31 -1.1
404,955 + Psyr_0378 0.38 -1.3
404,955 + Psyr_0378 0.38 -2.0
405,014 + Psyr_0378 0.40 +0.0
405,014 + Psyr_0378 0.40 -1.4
405,015 - Psyr_0378 0.40 -1.1
405,015 - Psyr_0378 0.40 -1.5
405,015 - Psyr_0378 0.40 -0.5
405,015 - Psyr_0378 0.40 +0.1
405,015 - Psyr_0378 0.40 -2.1
405,015 - Psyr_0378 0.40 -4.3
405,015 - Psyr_0378 0.40 -2.7
405,146 + Psyr_0378 0.45 -2.6
405,146 + Psyr_0378 0.45 +0.2
405,146 + Psyr_0378 0.45 -2.0
405,147 - Psyr_0378 0.45 -2.3
405,147 - Psyr_0378 0.45 -0.9
405,179 + Psyr_0378 0.47 -0.8
405,180 - Psyr_0378 0.47 -1.4
405,180 - Psyr_0378 0.47 -2.6
405,180 - Psyr_0378 0.47 -1.4
405,180 - Psyr_0378 0.47 -1.4
405,180 - Psyr_0378 0.47 -0.7
405,410 + Psyr_0378 0.56 -0.4
405,411 - Psyr_0378 0.56 +0.6
405,554 + Psyr_0378 0.61 +0.7
405,554 + Psyr_0378 0.61 -2.1
405,555 - Psyr_0378 0.61 +0.2
405,555 - Psyr_0378 0.61 -1.8
405,555 - Psyr_0378 0.61 -1.0
405,635 + Psyr_0378 0.64 -1.4
405,636 - Psyr_0378 0.64 -0.4
406,193 + Psyr_0378 0.86 -0.4
406,199 + Psyr_0378 0.86 +0.3
406,199 + Psyr_0378 0.86 -1.1
406,199 + Psyr_0378 0.86 -0.6
406,200 - Psyr_0378 0.86 -0.7
406,200 - Psyr_0378 0.86 -0.5
406,200 - Psyr_0378 0.86 +0.0
406,200 - Psyr_0378 0.86 -2.0
406,200 - Psyr_0378 0.86 +1.2
406,327 + -1.1
406,531 + -0.7
406,532 - +0.1
406,556 + -0.1
406,717 - -0.5
407,120 + +1.5
407,120 + +0.4

Or see this region's nucleotide sequence