Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0281 and Psyr_0282 overlap by 1 nucleotides Psyr_0282 and Psyr_0283 are separated by 50 nucleotides
Psyr_0281: Psyr_0281 - ABC transporter, at 299,935 to 300,942
_0281
Psyr_0282: Psyr_0282 - Binding-protein-dependent transport systems inner membrane component, at 300,942 to 301,616
_0282
Psyr_0283: Psyr_0283 - NLPA lipoprotein, at 301,667 to 302,440
_0283
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 299.950 kb on - strand at 299.987 kb on + strand at 300.069 kb on + strand, within Psyr_0281 at 300.758 kb on - strand, within Psyr_0281 at 300.758 kb on - strand, within Psyr_0281 at 300.758 kb on - strand, within Psyr_0281 at 300.758 kb on - strand, within Psyr_0281 at 300.822 kb on + strand, within Psyr_0281 at 300.924 kb on + strand at 300.924 kb on + strand at 300.924 kb on + strand at 300.925 kb on - strand at 300.925 kb on - strand at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.119 kb on + strand, within Psyr_0282 at 301.120 kb on - strand, within Psyr_0282 at 301.120 kb on - strand, within Psyr_0282 at 301.543 kb on + strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.544 kb on - strand, within Psyr_0282 at 301.631 kb on - strand at 301.678 kb on - strand at 301.678 kb on - strand at 301.678 kb on - strand at 301.835 kb on + strand, within Psyr_0283 at 301.835 kb on + strand, within Psyr_0283 at 301.835 kb on + strand, within Psyr_0283 at 301.835 kb on + strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.836 kb on - strand, within Psyr_0283 at 301.871 kb on - strand, within Psyr_0283 at 302.237 kb on + strand, within Psyr_0283 at 302.237 kb on + strand, within Psyr_0283 at 302.237 kb on + strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.238 kb on - strand, within Psyr_0283 at 302.411 kb on + strand at 302.411 kb on + strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.612 kb on - strand at 302.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 299,950 - -0.2 299,987 + -1.0 300,069 + Psyr_0281 0.13 -0.8 300,758 - Psyr_0281 0.82 -1.4 300,758 - Psyr_0281 0.82 -0.7 300,758 - Psyr_0281 0.82 -1.1 300,758 - Psyr_0281 0.82 -0.3 300,822 + Psyr_0281 0.88 -1.9 300,924 + -0.5 300,924 + -2.0 300,924 + -0.7 300,925 - -1.1 300,925 - -1.4 301,119 + Psyr_0282 0.26 -0.7 301,119 + Psyr_0282 0.26 -1.1 301,119 + Psyr_0282 0.26 -0.0 301,119 + Psyr_0282 0.26 -0.4 301,119 + Psyr_0282 0.26 -1.3 301,120 - Psyr_0282 0.26 -0.3 301,120 - Psyr_0282 0.26 +1.0 301,543 + Psyr_0282 0.89 -0.7 301,544 - Psyr_0282 0.89 -0.2 301,544 - Psyr_0282 0.89 -1.4 301,544 - Psyr_0282 0.89 -0.6 301,544 - Psyr_0282 0.89 -1.1 301,631 - +0.4 301,678 - +1.7 301,678 - +1.4 301,678 - +0.1 301,835 + Psyr_0283 0.22 +0.4 301,835 + Psyr_0283 0.22 -0.5 301,835 + Psyr_0283 0.22 +0.3 301,835 + Psyr_0283 0.22 +0.6 301,836 - Psyr_0283 0.22 +0.1 301,836 - Psyr_0283 0.22 -0.5 301,836 - Psyr_0283 0.22 +0.6 301,836 - Psyr_0283 0.22 -0.4 301,836 - Psyr_0283 0.22 +1.4 301,871 - Psyr_0283 0.26 -0.2 302,237 + Psyr_0283 0.74 -0.5 302,237 + Psyr_0283 0.74 -0.2 302,237 + Psyr_0283 0.74 -1.6 302,238 - Psyr_0283 0.74 -0.4 302,238 - Psyr_0283 0.74 +2.4 302,238 - Psyr_0283 0.74 -0.2 302,238 - Psyr_0283 0.74 +1.5 302,238 - Psyr_0283 0.74 -0.7 302,411 + +1.0 302,411 + -0.1 302,412 - +0.4 302,412 - -0.0 302,412 - -0.1 302,412 - -0.7 302,546 + -0.7 302,546 + +0.1 302,546 + -1.0 302,546 + +0.1 302,546 + +0.4 302,546 + +0.6 302,546 + -1.0 302,546 + +0.3 302,546 + +0.2 302,546 + +0.5 302,546 + +0.3 302,546 + +1.8 302,546 + +0.5 302,546 + +1.2 302,546 + +0.8 302,546 + -0.8 302,546 + +0.4 302,546 + -1.5 302,546 + -1.2 302,546 + -0.3 302,547 - +0.3 302,547 - +0.4 302,547 - +0.2 302,547 - -0.2 302,547 - -0.5 302,547 - +1.0 302,547 - +2.5 302,547 - +0.8 302,547 - -0.5 302,547 - -1.2 302,547 - +0.9 302,550 + +0.6 302,550 + -0.1 302,550 + -0.4 302,550 + -1.4 302,550 + -1.0 302,550 + +1.2 302,550 + -0.6 302,550 + -0.4 302,550 + +0.6 302,550 + +0.9 302,550 + +0.0 302,550 + +1.2 302,550 + +0.4 302,551 - +0.8 302,551 - -0.3 302,551 - -0.1 302,551 - +0.3 302,551 - -1.6 302,551 - -0.3 302,551 - -2.1 302,551 - +0.1 302,551 - +2.8 302,551 - +0.9 302,551 - -0.2 302,552 + -1.1 302,552 + -1.3 302,552 + -0.7 302,552 + +0.0 302,552 + +1.2 302,552 + -0.9 302,552 + +1.2 302,552 + -0.6 302,552 + -0.5 302,552 + +1.6 302,552 + +0.1 302,552 + +1.2 302,552 + -1.1 302,552 + +1.6 302,552 + +0.4 302,552 + +1.4 302,552 + +0.4 302,552 + +0.0 302,552 + +0.2 302,552 + -0.1 302,552 + -0.1 302,552 + -0.5 302,552 + +0.4 302,552 + -1.4 302,552 + +0.1 302,552 + +0.3 302,552 + -2.2 302,552 + -0.3 302,552 + +1.2 302,552 + -0.1 302,552 + -0.7 302,552 + -1.0 302,552 + +0.5 302,552 + +2.8 302,552 + +0.7 302,552 + -1.6 302,552 + +0.5 302,552 + -0.8 302,552 + +0.9 302,552 + +0.3 302,552 + +1.3 302,552 + +0.0 302,552 + -0.5 302,552 + +0.9 302,552 + -0.7 302,552 + +0.8 302,552 + +0.1 302,552 + +0.2 302,552 + +0.3 302,552 + +0.3 302,552 + +1.1 302,553 - +0.2 302,553 - +0.4 302,553 - +0.0 302,553 - +0.5 302,553 - +0.4 302,553 - -0.2 302,553 - +0.8 302,553 - +1.2 302,553 - +0.2 302,553 - -2.6 302,553 - -0.2 302,553 - -3.1 302,553 - +0.1 302,553 - -0.2 302,553 - -0.4 302,553 - +0.2 302,553 - +0.7 302,553 - -0.4 302,553 - +0.2 302,553 - +0.7 302,553 - +1.3 302,553 - -0.6 302,553 - +0.2 302,553 - +0.8 302,553 - -1.0 302,553 - -1.4 302,553 - +2.2 302,553 - -0.2 302,553 - +1.1 302,553 - -0.1 302,553 - +1.4 302,553 - +0.8 302,553 - -0.4 302,553 - -0.0 302,553 - -0.2 302,553 - +0.3 302,553 - +0.3 302,553 - -0.2 302,553 - +1.2 302,553 - +0.1 302,553 - -1.5 302,553 - -0.7 302,553 - -0.0 302,553 - +0.7 302,553 - +0.4 302,553 - +0.1 302,553 - +0.5 302,612 - +0.4 302,612 - +2.2
Or see this region's nucleotide sequence