Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0262 and Psyr_0263 are separated by 197 nucleotides Psyr_0263 and Psyr_0264 are separated by 10 nucleotides
Psyr_0262: Psyr_0262 - Transport-associated protein, at 277,811 to 278,650
_0262
Psyr_0263: Psyr_0263 - Two-component response regulator AlgB, at 278,848 to 280,194
_0263
Psyr_0264: Psyr_0264 - Alginate biosynthesis sensor protein KinB, at 280,205 to 281,992
_0264
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2 at 277.874 kb on - strand at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.992 kb on + strand, within Psyr_0262 at 277.993 kb on - strand, within Psyr_0262 at 277.993 kb on - strand, within Psyr_0262 at 277.993 kb on - strand, within Psyr_0262 at 277.993 kb on - strand, within Psyr_0262 at 277.993 kb on - strand, within Psyr_0262 at 278.650 kb on + strand at 278.651 kb on - strand at 278.706 kb on + strand at 278.706 kb on + strand at 278.736 kb on + strand at 278.737 kb on - strand at 278.753 kb on - strand at 278.753 kb on - strand at 278.814 kb on + strand at 278.814 kb on + strand at 278.840 kb on + strand at 278.944 kb on + strand at 278.945 kb on - strand at 278.945 kb on - strand at 278.945 kb on - strand at 279.002 kb on + strand, within Psyr_0263 at 279.003 kb on - strand, within Psyr_0263 at 279.163 kb on + strand, within Psyr_0263 at 279.164 kb on - strand, within Psyr_0263 at 279.650 kb on - strand, within Psyr_0263 at 279.763 kb on + strand, within Psyr_0263 at 279.764 kb on - strand, within Psyr_0263 at 279.865 kb on + strand, within Psyr_0263 at 279.865 kb on + strand, within Psyr_0263 at 279.865 kb on + strand, within Psyr_0263 at 279.866 kb on - strand, within Psyr_0263 at 279.866 kb on - strand, within Psyr_0263 at 279.919 kb on + strand, within Psyr_0263 at 279.995 kb on + strand, within Psyr_0263 at 279.995 kb on + strand, within Psyr_0263 at 279.996 kb on - strand, within Psyr_0263 at 280.100 kb on + strand at 280.100 kb on + strand at 280.101 kb on - strand at 280.183 kb on + strand at 280.183 kb on + strand at 280.183 kb on + strand at 280.184 kb on - strand at 280.184 kb on - strand at 280.184 kb on - strand at 280.190 kb on + strand at 280.190 kb on + strand at 280.190 kb on + strand at 280.190 kb on + strand at 280.191 kb on - strand at 280.191 kb on - strand at 280.197 kb on + strand at 280.197 kb on + strand at 280.198 kb on - strand at 280.198 kb on - strand at 280.198 kb on - strand at 280.198 kb on - strand at 280.198 kb on - strand at 280.319 kb on - strand at 280.342 kb on + strand at 280.342 kb on + strand at 280.342 kb on + strand at 280.342 kb on + strand at 280.538 kb on + strand, within Psyr_0264 at 280.539 kb on - strand, within Psyr_0264 at 280.568 kb on + strand, within Psyr_0264 at 280.569 kb on - strand, within Psyr_0264 at 280.590 kb on + strand, within Psyr_0264 at 280.590 kb on + strand, within Psyr_0264 at 280.591 kb on - strand, within Psyr_0264 at 280.591 kb on - strand, within Psyr_0264 at 280.591 kb on - strand, within Psyr_0264 at 281.003 kb on - strand, within Psyr_0264 at 281.003 kb on - strand, within Psyr_0264
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 277,874 - -0.8 277,992 + Psyr_0262 0.22 -0.5 277,992 + Psyr_0262 0.22 +0.4 277,992 + Psyr_0262 0.22 +0.0 277,992 + Psyr_0262 0.22 -0.9 277,992 + Psyr_0262 0.22 -0.1 277,992 + Psyr_0262 0.22 +0.4 277,992 + Psyr_0262 0.22 +1.0 277,993 - Psyr_0262 0.22 +1.2 277,993 - Psyr_0262 0.22 -0.7 277,993 - Psyr_0262 0.22 -0.2 277,993 - Psyr_0262 0.22 -0.3 277,993 - Psyr_0262 0.22 +0.4 278,650 + +0.3 278,651 - -1.5 278,706 + -0.5 278,706 + -0.2 278,736 + -2.2 278,737 - -0.1 278,753 - -0.2 278,753 - +1.0 278,814 + +0.5 278,814 + +0.1 278,840 + -0.2 278,944 + -0.4 278,945 - +1.2 278,945 - -1.0 278,945 - +0.2 279,002 + Psyr_0263 0.11 +1.8 279,003 - Psyr_0263 0.12 +0.2 279,163 + Psyr_0263 0.23 -2.1 279,164 - Psyr_0263 0.23 +0.8 279,650 - Psyr_0263 0.60 -0.0 279,763 + Psyr_0263 0.68 -1.6 279,764 - Psyr_0263 0.68 -1.3 279,865 + Psyr_0263 0.76 +0.1 279,865 + Psyr_0263 0.76 -1.6 279,865 + Psyr_0263 0.76 +1.8 279,866 - Psyr_0263 0.76 -1.9 279,866 - Psyr_0263 0.76 -0.9 279,919 + Psyr_0263 0.80 -1.2 279,995 + Psyr_0263 0.85 -1.2 279,995 + Psyr_0263 0.85 +0.0 279,996 - Psyr_0263 0.85 -0.1 280,100 + -2.2 280,100 + +0.6 280,101 - -0.1 280,183 + +1.2 280,183 + -1.4 280,183 + -0.9 280,184 - +0.6 280,184 - +0.6 280,184 - -0.5 280,190 + +0.5 280,190 + +1.1 280,190 + -0.7 280,190 + +1.3 280,191 - -0.2 280,191 - +2.5 280,197 + +0.3 280,197 + +0.9 280,198 - -1.7 280,198 - +0.3 280,198 - +0.1 280,198 - +0.0 280,198 - -0.8 280,319 - +1.5 280,342 + +0.8 280,342 + +0.4 280,342 + -0.4 280,342 + +1.6 280,538 + Psyr_0264 0.19 +1.2 280,539 - Psyr_0264 0.19 +0.6 280,568 + Psyr_0264 0.20 -1.3 280,569 - Psyr_0264 0.20 +0.6 280,590 + Psyr_0264 0.22 +1.7 280,590 + Psyr_0264 0.22 +0.8 280,591 - Psyr_0264 0.22 +0.2 280,591 - Psyr_0264 0.22 -1.4 280,591 - Psyr_0264 0.22 +0.2 281,003 - Psyr_0264 0.45 +0.2 281,003 - Psyr_0264 0.45 -1.8
Or see this region's nucleotide sequence