Experiment: KB with capsaicin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0206 and Psyr_0207 are separated by 52 nucleotides Psyr_0207 and Psyr_0208 are separated by 54 nucleotides Psyr_0208 and Psyr_0209 are separated by 24 nucleotides
Psyr_0206: Psyr_0206 - conserved hypothetical protein, at 220,906 to 221,754
_0206
Psyr_0207: Psyr_0207 - lipoprotein, putative, at 221,807 to 222,544
_0207
Psyr_0208: Psyr_0208 - endoribonuclease L-PSP, at 222,599 to 222,979
_0208
Psyr_0209: Psyr_0209 - RelA/SpoT protein, at 223,004 to 225,127
_0209
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 221.611 kb on + strand, within Psyr_0206 at 221.611 kb on + strand, within Psyr_0206 at 221.612 kb on - strand, within Psyr_0206 at 221.612 kb on - strand, within Psyr_0206 at 221.612 kb on - strand, within Psyr_0206 at 221.714 kb on - strand at 221.735 kb on - strand at 221.753 kb on - strand at 221.779 kb on + strand at 221.891 kb on + strand, within Psyr_0207 at 221.892 kb on - strand, within Psyr_0207 at 221.892 kb on - strand, within Psyr_0207 at 221.967 kb on + strand, within Psyr_0207 at 221.968 kb on - strand, within Psyr_0207 at 222.089 kb on + strand, within Psyr_0207 at 222.114 kb on + strand, within Psyr_0207 at 222.114 kb on + strand, within Psyr_0207 at 222.115 kb on - strand, within Psyr_0207 at 222.342 kb on + strand, within Psyr_0207 at 222.342 kb on + strand, within Psyr_0207 at 222.342 kb on + strand, within Psyr_0207 at 222.343 kb on - strand, within Psyr_0207 at 222.343 kb on - strand, within Psyr_0207 at 222.600 kb on + strand at 222.696 kb on + strand, within Psyr_0208 at 222.696 kb on + strand, within Psyr_0208 at 222.697 kb on - strand, within Psyr_0208 at 222.697 kb on - strand, within Psyr_0208 at 222.697 kb on - strand, within Psyr_0208 at 222.697 kb on - strand, within Psyr_0208 at 222.697 kb on - strand, within Psyr_0208 at 222.697 kb on - strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.894 kb on + strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.895 kb on - strand, within Psyr_0208 at 222.901 kb on + strand, within Psyr_0208 at 222.927 kb on + strand, within Psyr_0208 at 222.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml remove 221,611 + Psyr_0206 0.83 +0.2 221,611 + Psyr_0206 0.83 -1.0 221,612 - Psyr_0206 0.83 +1.6 221,612 - Psyr_0206 0.83 +1.0 221,612 - Psyr_0206 0.83 +1.7 221,714 - +0.2 221,735 - +0.9 221,753 - +0.2 221,779 + +1.5 221,891 + Psyr_0207 0.11 -0.3 221,892 - Psyr_0207 0.12 -0.1 221,892 - Psyr_0207 0.12 -0.3 221,967 + Psyr_0207 0.22 +0.2 221,968 - Psyr_0207 0.22 -0.0 222,089 + Psyr_0207 0.38 +0.5 222,114 + Psyr_0207 0.42 -0.6 222,114 + Psyr_0207 0.42 +0.6 222,115 - Psyr_0207 0.42 -1.6 222,342 + Psyr_0207 0.72 +0.4 222,342 + Psyr_0207 0.72 -0.5 222,342 + Psyr_0207 0.72 +0.2 222,343 - Psyr_0207 0.73 +2.2 222,343 - Psyr_0207 0.73 -0.4 222,600 + +0.9 222,696 + Psyr_0208 0.25 -1.9 222,696 + Psyr_0208 0.25 +1.2 222,697 - Psyr_0208 0.26 -0.1 222,697 - Psyr_0208 0.26 -0.2 222,697 - Psyr_0208 0.26 +0.7 222,697 - Psyr_0208 0.26 -0.4 222,697 - Psyr_0208 0.26 -0.8 222,697 - Psyr_0208 0.26 -0.5 222,894 + Psyr_0208 0.77 -0.7 222,894 + Psyr_0208 0.77 +0.7 222,894 + Psyr_0208 0.77 +0.1 222,894 + Psyr_0208 0.77 -0.2 222,894 + Psyr_0208 0.77 -0.2 222,894 + Psyr_0208 0.77 +0.3 222,894 + Psyr_0208 0.77 +0.0 222,894 + Psyr_0208 0.77 -1.1 222,894 + Psyr_0208 0.77 -1.7 222,894 + Psyr_0208 0.77 -0.7 222,895 - Psyr_0208 0.78 +0.0 222,895 - Psyr_0208 0.78 +0.2 222,895 - Psyr_0208 0.78 -1.1 222,895 - Psyr_0208 0.78 -0.2 222,895 - Psyr_0208 0.78 -0.0 222,895 - Psyr_0208 0.78 -0.8 222,895 - Psyr_0208 0.78 +0.1 222,895 - Psyr_0208 0.78 +0.4 222,895 - Psyr_0208 0.78 -0.6 222,901 + Psyr_0208 0.79 -0.8 222,927 + Psyr_0208 0.86 -0.5 222,952 + -0.2
Or see this region's nucleotide sequence