Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0108

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
118,207	+				-0.3
118,235	-				+0.6
118,249	+				+1.0
118,282	+				+0.3
118,283	-				+0.1
118,283	-				-0.2
118,292	+				-0.6
118,292	+				-1.0
118,292	+				+1.1
118,292	+				+0.5
118,292	+				+0.0
118,292	+				-1.0
118,292	+				+1.2
118,292	+				+1.2
118,293	-				-0.1
118,293	-				-2.0
118,293	-				+0.4
118,293	-				+1.0
118,293	-				+0.3
118,293	-				+0.5
118,296	+				-0.0
118,296	+				+0.7
118,296	+				+0.2
118,296	+				-0.0
118,296	+				-1.1
118,297	-				-0.0
118,297	-				-0.8
118,297	-				-0.2
118,297	-				+0.8
118,297	-				+1.0
118,297	-				+0.3
118,297	-				+0.1
118,319	+				-0.4
118,319	+				+1.1
118,319	+				+0.4
118,319	+				+0.4
118,320	-				+0.4
118,320	-				+0.3
118,320	-				+0.2
118,519	+		Psyr_0107	0.41	+0.5
118,520	-		Psyr_0107	0.41	-0.3
118,605	+		Psyr_0107	0.64	-1.4
118,606	-		Psyr_0107	0.64	-0.0
118,609	+		Psyr_0107	0.65	+0.7
118,609	+		Psyr_0107	0.65	+0.8
118,610	-		Psyr_0107	0.66	+0.4
118,666	+		Psyr_0107	0.81	+0.8
118,666	+		Psyr_0107	0.81	-0.1
118,667	-		Psyr_0107	0.81	-0.6
118,667	-		Psyr_0107	0.81	+1.5
118,667	-		Psyr_0107	0.81	+0.4
118,667	-		Psyr_0107	0.81	+2.2
118,667	-		Psyr_0107	0.81	-1.0
118,667	-		Psyr_0107	0.81	-1.0
118,667	-		Psyr_0107	0.81	-0.3
118,678	+		Psyr_0107	0.84	+2.2
118,678	+		Psyr_0107	0.84	+1.0
118,678	+		Psyr_0107	0.84	-2.5
118,679	-		Psyr_0107	0.84	+2.1
118,679	-		Psyr_0107	0.84	-0.6
118,679	-		Psyr_0107	0.84	-0.3
118,679	-		Psyr_0107	0.84	+0.0
118,679	-		Psyr_0107	0.84	+1.2
118,679	-		Psyr_0107	0.84	+1.2
118,776	+				-0.4
118,823	+				+2.2
118,824	-				+0.1
118,824	-				-1.6
118,981	+				+1.3
119,064	+				+0.6
119,065	-				-1.3
119,065	-				+0.5
119,075	+				+0.2
119,141	+		Psyr_0108	0.14	+0.2
119,141	+		Psyr_0108	0.14	+0.4
119,141	+		Psyr_0108	0.14	-0.4
119,159	-		Psyr_0108	0.16	-0.9
119,192	-		Psyr_0108	0.18	+0.0
119,285	+		Psyr_0108	0.25	+2.2
119,285	+		Psyr_0108	0.25	-0.1
119,286	-		Psyr_0108	0.25	+0.1
119,286	-		Psyr_0108	0.25	-0.3
119,286	-		Psyr_0108	0.25	+0.8
119,286	-		Psyr_0108	0.25	-0.6
119,286	-		Psyr_0108	0.25	-0.9
119,306	+		Psyr_0108	0.26	+0.4
119,306	+		Psyr_0108	0.26	-0.8
119,306	+		Psyr_0108	0.26	-1.1
119,306	+		Psyr_0108	0.26	+0.4
119,306	+		Psyr_0108	0.26	-0.7
119,306	+		Psyr_0108	0.26	+0.1
119,307	-		Psyr_0108	0.27	-1.0
119,307	-		Psyr_0108	0.27	-1.9
119,307	-		Psyr_0108	0.27	+0.2
119,307	-		Psyr_0108	0.27	-0.4
119,307	-		Psyr_0108	0.27	-0.8
119,307	-		Psyr_0108	0.27	+0.5
119,307	-		Psyr_0108	0.27	+0.5
119,343	-		Psyr_0108	0.29	-0.9
119,958	-		Psyr_0108	0.74	+0.1
120,110	+		Psyr_0108	0.86	+0.6
120,150	-		Psyr_0108	0.89	-1.0
120,150	-		Psyr_0108	0.89	+0.4
120,260	+				-0.2
120,349	+				+0.0
120,349	+				-0.1
120,349	+				-1.0
120,349	+				-1.6
120,349	+				-0.8
120,350	-				-0.6
120,350	-				-0.6
120,350	-				+0.1
120,350	-				-0.8
120,519	+				+1.2
120,519	+				+0.4
120,520	-				-0.6
120,520	-				+0.3
120,520	-				-1.7
120,622	+				+0.6
120,649	-				-0.4
120,664	+				+0.0
120,665	-				-1.1
120,680	+				+0.1
120,680	+				+0.0
120,680	+				+0.4
120,681	-				-0.1
120,681	-				+1.2
120,688	+				+0.3
120,688	+				+0.1
120,688	+				-0.8
120,689	-				-0.2
120,693	+				-0.0
120,694	-				+0.4
120,694	-				-1.1
120,694	-				+0.2
120,694	-				+1.2
120,741	-				-0.0
120,741	-				-0.8
120,741	-				-0.2
120,759	+				-0.8
120,759	+				-0.0
120,760	-				+0.6
120,760	-				-1.0
120,769	+		Psyr_0109	0.12	+0.8
120,769	+		Psyr_0109	0.12	+0.5
120,829	+		Psyr_0109	0.26	-0.2
120,908	-		Psyr_0109	0.44	+0.5
120,909	+		Psyr_0109	0.45	-0.3
120,910	-		Psyr_0109	0.45	-2.7
120,910	-		Psyr_0109	0.45	+0.0
120,917	+		Psyr_0109	0.46	+0.7
120,917	+		Psyr_0109	0.46	-0.1
120,918	-		Psyr_0109	0.47	-1.1
120,918	-		Psyr_0109	0.47	+0.0
120,918	-		Psyr_0109	0.47	+1.2
120,918	-		Psyr_0109	0.47	+0.3
120,927	-		Psyr_0109	0.49	+1.2
120,939	+		Psyr_0109	0.52	-0.3
120,950	+		Psyr_0109	0.54	-0.2
121,001	-		Psyr_0109	0.66	-0.0
121,001	-		Psyr_0109	0.66	+0.2
121,019	+		Psyr_0109	0.70	+0.2
121,019	+		Psyr_0109	0.70	-1.1
121,019	+		Psyr_0109	0.70	+0.2
121,019	+		Psyr_0109	0.70	+0.6
121,019	+		Psyr_0109	0.70	+0.6
121,019	+		Psyr_0109	0.70	-0.7
121,020	-		Psyr_0109	0.71	-1.1
121,020	-		Psyr_0109	0.71	+0.3
121,020	-		Psyr_0109	0.71	+0.0
121,021	+		Psyr_0109	0.71	-0.2
121,022	-		Psyr_0109	0.71	-0.3
121,091	+		Psyr_0109	0.87	+1.1
121,126	+				+0.8
121,126	+				-0.5
121,127	-				-2.7
121,139	-				-0.3
121,139	-				-0.0
121,142	+				+0.6
121,239	-				+2.8
121,239	-				-0.3
121,251	+				+0.2
121,251	+				-1.5
121,251	+				-0.3
121,251	+				-0.3
121,251	+				+0.4
121,251	+				-1.1
121,251	+				-0.4
121,251	+				-0.6
121,251	+				+1.7
121,252	-				-1.4
121,252	-				-0.1
121,255	+				+0.1
121,255	+				-0.6
121,255	+				+1.4
121,255	+				+1.3
121,255	+				-0.5
121,256	-				-0.4
121,256	-				+0.8
121,256	-				-1.2