Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0044

Experiment: KB with capsaicin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0043 and Psyr_0044 are separated by 171 nucleotidesPsyr_0044 and Psyr_0045 are separated by 112 nucleotides Psyr_0043: Psyr_0043 - conserved hypothetical protein, at 44,004 to 45,059 _0043 Psyr_0044: Psyr_0044 - transferase hexapeptide repeat protein, at 45,231 to 45,776 _0044 Psyr_0045: Psyr_0045 - oligopeptidase A, Metallo peptidase, MEROPS family M03A, at 45,889 to 47,940 _0045 Position (kb) 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 44.268 kb on + strand, within Psyr_0043at 44.269 kb on - strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.383 kb on - strand, within Psyr_0043at 44.385 kb on + strand, within Psyr_0043at 44.385 kb on + strand, within Psyr_0043at 44.386 kb on - strand, within Psyr_0043at 44.445 kb on + strand, within Psyr_0043at 44.445 kb on + strand, within Psyr_0043at 44.445 kb on + strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.466 kb on + strand, within Psyr_0043at 44.574 kb on + strand, within Psyr_0043at 44.574 kb on + strand, within Psyr_0043at 44.575 kb on - strand, within Psyr_0043at 44.575 kb on - strand, within Psyr_0043at 44.607 kb on + strand, within Psyr_0043at 44.897 kb on + strand, within Psyr_0043at 44.898 kb on - strand, within Psyr_0043at 44.919 kb on + strand, within Psyr_0043at 44.919 kb on + strand, within Psyr_0043at 44.920 kb on - strand, within Psyr_0043at 44.985 kb on + strandat 45.216 kb on + strandat 45.217 kb on - strandat 45.217 kb on - strandat 45.219 kb on + strandat 45.219 kb on + strandat 45.219 kb on + strandat 45.219 kb on + strandat 45.219 kb on + strandat 45.220 kb on - strandat 45.220 kb on - strandat 45.220 kb on - strandat 45.220 kb on - strandat 45.220 kb on - strandat 45.239 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.280 kb on + strandat 45.281 kb on - strandat 45.281 kb on - strandat 45.281 kb on - strandat 45.281 kb on - strandat 45.281 kb on - strandat 45.281 kb on - strandat 45.285 kb on - strandat 45.295 kb on + strand, within Psyr_0044at 45.358 kb on + strand, within Psyr_0044at 45.358 kb on + strand, within Psyr_0044at 45.779 kb on + strandat 45.780 kb on - strandat 45.801 kb on + strandat 45.801 kb on + strandat 45.801 kb on + strandat 45.809 kb on + strandat 45.809 kb on + strandat 45.809 kb on + strandat 45.845 kb on + strandat 45.845 kb on + strandat 45.846 kb on - strandat 45.849 kb on + strandat 45.850 kb on - strandat 45.850 kb on - strandat 45.850 kb on - strandat 45.850 kb on - strandat 45.850 kb on - strandat 45.850 kb on - strandat 45.850 kb on - strandat 46.153 kb on + strand, within Psyr_0045at 46.153 kb on + strand, within Psyr_0045at 46.154 kb on - strand, within Psyr_0045at 46.154 kb on - strand, within Psyr_0045at 46.225 kb on + strand, within Psyr_0045at 46.226 kb on - strand, within Psyr_0045at 46.226 kb on - strand, within Psyr_0045at 46.525 kb on + strand, within Psyr_0045at 46.526 kb on - strand, within Psyr_0045at 46.552 kb on + strand, within Psyr_0045at 46.552 kb on + strand, within Psyr_0045at 46.552 kb on + strand, within Psyr_0045at 46.552 kb on + strand, within Psyr_0045at 46.552 kb on + strand, within Psyr_0045at 46.552 kb on + strand, within Psyr_0045at 46.552 kb on + strand, within Psyr_0045at 46.553 kb on - strand, within Psyr_0045at 46.553 kb on - strand, within Psyr_0045at 46.553 kb on - strand, within Psyr_0045at 46.556 kb on - strand, within Psyr_0045at 46.556 kb on - strand, within Psyr_0045at 46.570 kb on + strand, within Psyr_0045at 46.571 kb on - strand, within Psyr_0045at 46.571 kb on - strand, within Psyr_0045at 46.603 kb on + strand, within Psyr_0045at 46.603 kb on + strand, within Psyr_0045at 46.729 kb on + strand, within Psyr_0045at 46.729 kb on + strand, within Psyr_0045at 46.729 kb on + strand, within Psyr_0045at 46.729 kb on + strand, within Psyr_0045at 46.729 kb on + strand, within Psyr_0045at 46.729 kb on + strand, within Psyr_0045

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with capsaicin 0.25 mg/ml
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44,268 + Psyr_0043 0.25 -0.2
44,269 - Psyr_0043 0.25 -0.4
44,289 + Psyr_0043 0.27 +1.0
44,289 + Psyr_0043 0.27 -1.9
44,289 + Psyr_0043 0.27 -1.9
44,289 + Psyr_0043 0.27 -0.3
44,289 + Psyr_0043 0.27 +0.2
44,289 + Psyr_0043 0.27 +1.0
44,290 - Psyr_0043 0.27 -0.3
44,290 - Psyr_0043 0.27 +0.5
44,290 - Psyr_0043 0.27 +0.1
44,290 - Psyr_0043 0.27 -1.1
44,290 - Psyr_0043 0.27 -1.1
44,290 - Psyr_0043 0.27 -2.3
44,383 - Psyr_0043 0.36 +1.2
44,385 + Psyr_0043 0.36 +0.2
44,385 + Psyr_0043 0.36 -0.8
44,386 - Psyr_0043 0.36 +0.7
44,445 + Psyr_0043 0.42 -0.2
44,445 + Psyr_0043 0.42 -0.2
44,445 + Psyr_0043 0.42 -0.4
44,446 - Psyr_0043 0.42 +0.7
44,446 - Psyr_0043 0.42 +1.2
44,446 - Psyr_0043 0.42 -0.7
44,446 - Psyr_0043 0.42 +0.7
44,446 - Psyr_0043 0.42 -0.5
44,446 - Psyr_0043 0.42 +0.4
44,446 - Psyr_0043 0.42 -1.2
44,446 - Psyr_0043 0.42 +0.1
44,466 + Psyr_0043 0.44 +0.1
44,574 + Psyr_0043 0.54 +0.4
44,574 + Psyr_0043 0.54 +0.6
44,575 - Psyr_0043 0.54 -0.3
44,575 - Psyr_0043 0.54 +0.3
44,607 + Psyr_0043 0.57 +0.4
44,897 + Psyr_0043 0.85 +0.6
44,898 - Psyr_0043 0.85 -0.3
44,919 + Psyr_0043 0.87 +0.1
44,919 + Psyr_0043 0.87 -0.1
44,920 - Psyr_0043 0.87 -0.1
44,985 + -0.1
45,216 + -0.6
45,217 - +0.1
45,217 - +0.1
45,219 + -0.0
45,219 + -0.4
45,219 + -0.1
45,219 + +0.5
45,219 + -0.2
45,220 - +0.3
45,220 - -0.0
45,220 - -2.1
45,220 - +0.9
45,220 - +0.5
45,239 + -0.3
45,280 + -0.8
45,280 + +0.3
45,280 + -0.2
45,280 + -0.2
45,280 + -0.1
45,280 + +0.4
45,280 + +0.6
45,280 + +0.6
45,280 + +0.4
45,280 + -1.3
45,280 + -0.2
45,280 + -0.6
45,280 + -0.1
45,281 - -0.3
45,281 - -0.3
45,281 - +0.0
45,281 - -3.6
45,281 - +0.5
45,281 - -0.5
45,285 - +0.0
45,295 + Psyr_0044 0.12 -1.3
45,358 + Psyr_0044 0.23 +0.7
45,358 + Psyr_0044 0.23 +1.2
45,779 + -0.5
45,780 - +0.2
45,801 + +0.2
45,801 + -1.6
45,801 + -0.3
45,809 + +0.2
45,809 + +1.0
45,809 + +2.7
45,845 + +0.7
45,845 + -0.6
45,846 - -0.4
45,849 + +0.5
45,850 - +0.0
45,850 - -0.4
45,850 - -0.2
45,850 - -0.7
45,850 - -0.5
45,850 - +0.9
45,850 - +0.0
46,153 + Psyr_0045 0.13 -0.8
46,153 + Psyr_0045 0.13 +0.2
46,154 - Psyr_0045 0.13 -1.2
46,154 - Psyr_0045 0.13 +1.0
46,225 + Psyr_0045 0.16 +1.1
46,226 - Psyr_0045 0.16 -0.8
46,226 - Psyr_0045 0.16 +0.2
46,525 + Psyr_0045 0.31 +0.2
46,526 - Psyr_0045 0.31 +1.0
46,552 + Psyr_0045 0.32 +0.1
46,552 + Psyr_0045 0.32 +0.2
46,552 + Psyr_0045 0.32 +1.7
46,552 + Psyr_0045 0.32 +0.7
46,552 + Psyr_0045 0.32 +0.2
46,552 + Psyr_0045 0.32 -0.5
46,552 + Psyr_0045 0.32 +0.5
46,553 - Psyr_0045 0.32 +0.4
46,553 - Psyr_0045 0.32 +0.2
46,553 - Psyr_0045 0.32 +1.2
46,556 - Psyr_0045 0.33 -0.3
46,556 - Psyr_0045 0.33 +0.5
46,570 + Psyr_0045 0.33 +0.2
46,571 - Psyr_0045 0.33 +1.2
46,571 - Psyr_0045 0.33 +0.5
46,603 + Psyr_0045 0.35 -0.1
46,603 + Psyr_0045 0.35 +0.4
46,729 + Psyr_0045 0.41 -0.4
46,729 + Psyr_0045 0.41 +0.0
46,729 + Psyr_0045 0.41 +2.8
46,729 + Psyr_0045 0.41 +2.2
46,729 + Psyr_0045 0.41 -0.1
46,729 + Psyr_0045 0.41 -1.2

Or see this region's nucleotide sequence