Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0038

Experiment: KB with capsaicin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with capsaicin 0.25 mg/ml
40,289	+				+0.9
40,289	+				-0.8
40,289	+				+1.1
40,289	+				-1.2
40,289	+				+1.5
40,289	+				-0.2
40,289	+				+0.2
40,289	+				-0.8
40,289	+				-0.5
40,289	+				-0.9
40,290	-				+1.0
40,290	-				-0.6
40,290	-				-0.6
40,290	-				+0.9
40,290	-				+0.4
40,290	-				-0.8
40,290	-				+0.7
40,290	-				+0.3
40,355	+		Psyr_0036	0.28	-0.5
40,356	-		Psyr_0036	0.28	-0.3
40,356	-		Psyr_0036	0.28	+0.5
40,406	+		Psyr_0036	0.43	-1.3
40,406	+		Psyr_0036	0.43	+0.8
40,407	-		Psyr_0036	0.44	-0.2
40,407	-		Psyr_0036	0.44	+2.1
40,407	-		Psyr_0036	0.44	+1.7
40,407	-		Psyr_0036	0.44	+0.4
40,407	-		Psyr_0036	0.44	-0.8
40,552	-		Psyr_0036	0.88	+0.4
40,552	-		Psyr_0036	0.88	+1.0
40,581	+				+1.3
40,581	+				-0.3
40,581	+				-0.3
40,581	+				-0.1
40,581	+				-0.0
40,581	+				-0.3
40,581	+				-0.0
40,581	+				+1.2
40,582	-				-0.3
40,582	-				-0.2
40,582	-				-0.3
40,582	-				-0.9
40,582	-				+0.5
40,582	-				-0.6
40,582	-				-0.3
40,582	-				+0.2
40,582	-				+3.1
40,584	+				+1.9
40,584	+				+2.2
40,720	+				-0.1
40,720	+				-1.0
40,720	+				-0.5
40,720	+				+0.1
40,721	-				+0.2
40,721	-				-1.1
40,721	-				+1.8
40,721	-				+1.4
40,722	+				+0.6
40,774	+				+0.3
40,774	+				+1.8
40,774	+				-0.9
40,774	+				+0.5
40,774	+				+0.5
40,774	+				+0.0
40,774	+				-0.3
40,775	-				-0.6
40,775	-				-0.8
40,775	-				+0.2
40,934	+		Psyr_0037	0.82	-0.8
40,934	+		Psyr_0037	0.82	+0.9
40,935	-		Psyr_0037	0.83	-1.2
40,969	+				-1.2
40,969	+				-0.0
40,970	-				-0.3
40,970	-				+0.4
41,006	+				+1.4
41,016	+				+0.3
41,017	-				-1.8
41,017	-				-1.4
41,030	+				-1.1
41,030	+				-0.0
41,144	+				+0.2
41,248	+		Psyr_0038	0.56	+0.8
41,248	+		Psyr_0038	0.56	+0.7
41,248	+		Psyr_0038	0.56	+0.2
41,248	+		Psyr_0038	0.56	+1.1
41,248	+		Psyr_0038	0.56	+0.7
41,248	+		Psyr_0038	0.56	+1.1
41,249	-		Psyr_0038	0.56	+0.8
41,249	-		Psyr_0038	0.56	+0.7
41,515	+				-1.2
41,542	+				+0.1
41,542	+				+0.9
41,542	+				-0.7
41,542	+				+1.2
41,542	+				+0.7
41,542	+				+1.0
41,542	+				+2.2
41,542	+				-0.4
41,542	+				-0.5
41,543	-				-0.1
41,543	-				-0.5
41,543	-				-0.3
41,543	-				-0.3
41,543	-				+0.1
41,543	-				+0.6
41,543	-				-0.5
41,543	-				-0.8
41,543	-				+0.3
41,543	-				+0.2
41,543	-				+1.2
41,543	-				-0.9
41,543	-				-0.4
41,543	-				+0.1
41,543	-				+0.1
41,555	+				-0.4
41,655	+		Psyr_0039	0.17	+0.2
41,756	-		Psyr_0039	0.27	-0.8
41,774	-		Psyr_0039	0.29	-0.3
41,774	-		Psyr_0039	0.29	+0.1
41,774	-		Psyr_0039	0.29	+0.9
41,827	+		Psyr_0039	0.34	-1.1
41,828	-		Psyr_0039	0.34	-0.9
41,828	-		Psyr_0039	0.34	-0.2
41,828	-		Psyr_0039	0.34	-2.2
41,869	+		Psyr_0039	0.38	-1.6
41,893	+		Psyr_0039	0.41	-0.1
41,894	-		Psyr_0039	0.41	-0.1
41,894	-		Psyr_0039	0.41	-1.3
42,049	+		Psyr_0039	0.56	+0.7
42,049	+		Psyr_0039	0.56	+0.3
42,049	+		Psyr_0039	0.56	-0.3
42,050	-		Psyr_0039	0.56	+0.4