Experiment: H2 deepwell casamino FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07745 and MMP_RS07750 are separated by 267 nucleotides MMP_RS07750 and MMP_RS07755 are separated by 20 nucleotides MMP_RS07755 and MMP_RS07760 are separated by 132 nucleotides
MMP_RS07745: MMP_RS07745 - pyruvate ferredoxin oxidoreductase subunit gamma, at 1,465,867 to 1,466,397
_RS07745
MMP_RS07750: MMP_RS07750 - DUF357 domain-containing protein, at 1,466,665 to 1,466,970
_RS07750
MMP_RS07755: MMP_RS07755 - DUF555 domain-containing protein, at 1,466,991 to 1,467,332
_RS07755
MMP_RS07760: MMP_RS07760 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 1,467,465 to 1,468,760
_RS07760
Position (kb)
1466
1467
1468 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1466.148 kb on - strand at 1466.189 kb on + strand at 1466.474 kb on + strand at 1466.534 kb on + strand at 1466.574 kb on + strand at 1466.583 kb on + strand at 1466.583 kb on + strand at 1466.588 kb on - strand at 1466.682 kb on - strand at 1466.683 kb on + strand at 1466.843 kb on - strand, within MMP_RS07750 at 1466.860 kb on + strand, within MMP_RS07750 at 1466.860 kb on + strand, within MMP_RS07750 at 1466.860 kb on + strand, within MMP_RS07750 at 1466.862 kb on + strand, within MMP_RS07750 at 1466.885 kb on + strand, within MMP_RS07750 at 1466.928 kb on - strand, within MMP_RS07750 at 1466.934 kb on + strand, within MMP_RS07750 at 1466.934 kb on + strand, within MMP_RS07750 at 1467.062 kb on + strand, within MMP_RS07755 at 1467.203 kb on + strand, within MMP_RS07755 at 1467.368 kb on - strand at 1467.427 kb on - strand at 1467.462 kb on + strand at 1468.156 kb on + strand at 1468.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 deepwell casamino FREE remove 1,466,148 - -2.7 1,466,189 + -1.4 1,466,474 + -2.2 1,466,534 + -0.1 1,466,574 + +0.6 1,466,583 + -0.2 1,466,583 + +0.5 1,466,588 - +0.4 1,466,682 - +0.7 1,466,683 + +0.5 1,466,843 - MMP_RS07750 0.58 -3.1 1,466,860 + MMP_RS07750 0.64 -3.8 1,466,860 + MMP_RS07750 0.64 -4.6 1,466,860 + MMP_RS07750 0.64 -2.1 1,466,862 + MMP_RS07750 0.64 -3.8 1,466,885 + MMP_RS07750 0.72 -4.7 1,466,928 - MMP_RS07750 0.86 -5.2 1,466,934 + MMP_RS07750 0.88 -3.5 1,466,934 + MMP_RS07750 0.88 -3.4 1,467,062 + MMP_RS07755 0.21 -4.0 1,467,203 + MMP_RS07755 0.62 -3.8 1,467,368 - +1.2 1,467,427 - -2.2 1,467,462 + +0.7 1,468,156 + -3.0 1,468,242 - -1.9
Or see this region's nucleotide sequence