Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08615

Experiment: H2 N-free with 10mM D-glucosamine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS08610 and MMJJ_RS08615 overlap by 14 nucleotidesMMJJ_RS08615 and MMJJ_RS08620 are separated by 28 nucleotides MMJJ_RS08610: MMJJ_RS08610 - oligosaccharide repeat unit polymerase family protein, at 1,585,396 to 1,586,469 _RS08610 MMJJ_RS08615: MMJJ_RS08615 - oligosaccharide repeat unit polymerase family protein, at 1,586,456 to 1,587,631 _RS08615 MMJJ_RS08620: MMJJ_RS08620 - DUF373 family protein, at 1,587,660 to 1,588,769 _RS08620 Position (kb) 1586 1587 1588Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1585.726 kb on + strand, within MMJJ_RS08610at 1586.417 kb on - strandat 1586.417 kb on - strandat 1586.533 kb on + strandat 1586.628 kb on - strand, within MMJJ_RS08615at 1586.629 kb on + strand, within MMJJ_RS08615at 1586.691 kb on - strand, within MMJJ_RS08615at 1586.775 kb on - strand, within MMJJ_RS08615at 1586.805 kb on - strand, within MMJJ_RS08615at 1586.806 kb on + strand, within MMJJ_RS08615at 1586.838 kb on + strand, within MMJJ_RS08615at 1586.871 kb on - strand, within MMJJ_RS08615at 1586.881 kb on + strand, within MMJJ_RS08615at 1586.881 kb on + strand, within MMJJ_RS08615at 1586.905 kb on + strand, within MMJJ_RS08615at 1586.905 kb on + strand, within MMJJ_RS08615at 1586.967 kb on - strand, within MMJJ_RS08615at 1587.020 kb on - strand, within MMJJ_RS08615at 1587.031 kb on + strand, within MMJJ_RS08615at 1587.081 kb on - strand, within MMJJ_RS08615at 1587.082 kb on + strand, within MMJJ_RS08615at 1587.103 kb on - strand, within MMJJ_RS08615at 1587.153 kb on - strand, within MMJJ_RS08615at 1587.154 kb on + strand, within MMJJ_RS08615at 1587.157 kb on - strandat 1587.273 kb on - strand, within MMJJ_RS08615at 1587.274 kb on + strand, within MMJJ_RS08615at 1587.283 kb on - strand, within MMJJ_RS08615at 1587.286 kb on + strand, within MMJJ_RS08615at 1587.323 kb on + strand, within MMJJ_RS08615at 1587.354 kb on - strand, within MMJJ_RS08615at 1587.354 kb on - strand, within MMJJ_RS08615at 1587.373 kb on - strand, within MMJJ_RS08615at 1587.374 kb on + strand, within MMJJ_RS08615at 1587.374 kb on + strand, within MMJJ_RS08615at 1587.374 kb on + strand, within MMJJ_RS08615at 1587.376 kb on - strand, within MMJJ_RS08615at 1587.377 kb on + strand, within MMJJ_RS08615at 1587.380 kb on + strand, within MMJJ_RS08615at 1587.405 kb on + strand, within MMJJ_RS08615at 1587.429 kb on - strand, within MMJJ_RS08615at 1587.445 kb on + strand, within MMJJ_RS08615at 1587.445 kb on + strand, within MMJJ_RS08615at 1587.460 kb on - strand, within MMJJ_RS08615at 1587.465 kb on - strand, within MMJJ_RS08615at 1587.466 kb on + strand, within MMJJ_RS08615at 1587.471 kb on + strand, within MMJJ_RS08615at 1587.514 kb on + strandat 1587.659 kb on + strandat 1587.671 kb on + strandat 1587.886 kb on - strand, within MMJJ_RS08620at 1587.952 kb on - strand, within MMJJ_RS08620at 1588.008 kb on + strand, within MMJJ_RS08620at 1588.326 kb on + strand, within MMJJ_RS08620at 1588.402 kb on - strandat 1588.408 kb on - strand, within MMJJ_RS08620at 1588.445 kb on + strand, within MMJJ_RS08620at 1588.475 kb on - strand, within MMJJ_RS08620at 1588.476 kb on + strand, within MMJJ_RS08620at 1588.528 kb on - strand, within MMJJ_RS08620at 1588.540 kb on - strand, within MMJJ_RS08620

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM D-glucosamine
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1,585,726 + MMJJ_RS08610 0.31 -1.5
1,586,417 - +0.3
1,586,417 - -0.4
1,586,533 + -2.0
1,586,628 - MMJJ_RS08615 0.15 -0.7
1,586,629 + MMJJ_RS08615 0.15 -2.6
1,586,691 - MMJJ_RS08615 0.20 -2.2
1,586,775 - MMJJ_RS08615 0.27 -1.2
1,586,805 - MMJJ_RS08615 0.30 -3.2
1,586,806 + MMJJ_RS08615 0.30 -3.1
1,586,838 + MMJJ_RS08615 0.32 -0.5
1,586,871 - MMJJ_RS08615 0.35 -0.7
1,586,881 + MMJJ_RS08615 0.36 -1.2
1,586,881 + MMJJ_RS08615 0.36 -2.6
1,586,905 + MMJJ_RS08615 0.38 -1.9
1,586,905 + MMJJ_RS08615 0.38 -1.7
1,586,967 - MMJJ_RS08615 0.43 -1.2
1,587,020 - MMJJ_RS08615 0.48 -0.5
1,587,031 + MMJJ_RS08615 0.49 -1.6
1,587,081 - MMJJ_RS08615 0.53 -1.2
1,587,082 + MMJJ_RS08615 0.53 -1.6
1,587,103 - MMJJ_RS08615 0.55 -1.9
1,587,153 - MMJJ_RS08615 0.59 -2.8
1,587,154 + MMJJ_RS08615 0.59 -3.7
1,587,157 - +1.4
1,587,273 - MMJJ_RS08615 0.69 -2.1
1,587,274 + MMJJ_RS08615 0.70 +0.3
1,587,283 - MMJJ_RS08615 0.70 -2.0
1,587,286 + MMJJ_RS08615 0.71 -3.0
1,587,323 + MMJJ_RS08615 0.74 -2.0
1,587,354 - MMJJ_RS08615 0.76 -1.3
1,587,354 - MMJJ_RS08615 0.76 -1.7
1,587,373 - MMJJ_RS08615 0.78 -2.3
1,587,374 + MMJJ_RS08615 0.78 -1.6
1,587,374 + MMJJ_RS08615 0.78 -1.0
1,587,374 + MMJJ_RS08615 0.78 -0.5
1,587,376 - MMJJ_RS08615 0.78 -2.4
1,587,377 + MMJJ_RS08615 0.78 -2.0
1,587,380 + MMJJ_RS08615 0.79 -1.0
1,587,405 + MMJJ_RS08615 0.81 -1.6
1,587,429 - MMJJ_RS08615 0.83 +0.1
1,587,445 + MMJJ_RS08615 0.84 -2.0
1,587,445 + MMJJ_RS08615 0.84 -1.6
1,587,460 - MMJJ_RS08615 0.85 -2.6
1,587,465 - MMJJ_RS08615 0.86 -3.7
1,587,466 + MMJJ_RS08615 0.86 -2.7
1,587,471 + MMJJ_RS08615 0.86 -2.1
1,587,514 + -0.7
1,587,659 + +1.1
1,587,671 + -1.3
1,587,886 - MMJJ_RS08620 0.20 -1.3
1,587,952 - MMJJ_RS08620 0.26 -0.5
1,588,008 + MMJJ_RS08620 0.31 -1.2
1,588,326 + MMJJ_RS08620 0.60 -0.7
1,588,402 - -1.0
1,588,408 - MMJJ_RS08620 0.67 -3.3
1,588,445 + MMJJ_RS08620 0.71 -1.0
1,588,475 - MMJJ_RS08620 0.73 +0.8
1,588,476 + MMJJ_RS08620 0.74 -0.9
1,588,528 - MMJJ_RS08620 0.78 -4.1
1,588,540 - MMJJ_RS08620 0.79 -0.1

Or see this region's nucleotide sequence