Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07680

Experiment: H2 N-free with 10mM D-glucosamine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS07675 and MMJJ_RS07680 are separated by 23 nucleotidesMMJJ_RS07680 and MMJJ_RS07685 are separated by 31 nucleotides MMJJ_RS07675: MMJJ_RS07675 - ADP-specific phosphofructokinase, at 1,405,430 to 1,406,821 _RS07675 MMJJ_RS07680: MMJJ_RS07680 - glucose-6-phosphate isomerase, at 1,406,845 to 1,408,161 _RS07680 MMJJ_RS07685: MMJJ_RS07685 - glycogen/starch synthase, at 1,408,193 to 1,409,761 _RS07685 Position (kb) 1406 1407 1408 1409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1405.859 kb on + strand, within MMJJ_RS07675at 1405.883 kb on - strand, within MMJJ_RS07675at 1405.884 kb on + strand, within MMJJ_RS07675at 1405.884 kb on + strand, within MMJJ_RS07675at 1405.884 kb on + strand, within MMJJ_RS07675at 1405.898 kb on - strand, within MMJJ_RS07675at 1405.898 kb on - strand, within MMJJ_RS07675at 1405.899 kb on + strand, within MMJJ_RS07675at 1405.899 kb on + strand, within MMJJ_RS07675at 1405.899 kb on + strand, within MMJJ_RS07675at 1405.911 kb on + strand, within MMJJ_RS07675at 1405.911 kb on + strand, within MMJJ_RS07675at 1406.079 kb on + strand, within MMJJ_RS07675at 1406.079 kb on + strand, within MMJJ_RS07675at 1406.236 kb on - strand, within MMJJ_RS07675at 1406.237 kb on + strand, within MMJJ_RS07675at 1406.259 kb on + strand, within MMJJ_RS07675at 1406.259 kb on + strand, within MMJJ_RS07675at 1406.261 kb on + strand, within MMJJ_RS07675at 1406.323 kb on - strand, within MMJJ_RS07675at 1406.408 kb on + strand, within MMJJ_RS07675at 1406.499 kb on + strand, within MMJJ_RS07675at 1406.532 kb on - strand, within MMJJ_RS07675at 1406.532 kb on - strand, within MMJJ_RS07675at 1406.555 kb on + strand, within MMJJ_RS07675at 1406.680 kb on - strand, within MMJJ_RS07675at 1406.709 kb on + strandat 1406.745 kb on + strandat 1406.759 kb on - strandat 1406.759 kb on - strandat 1406.760 kb on + strandat 1406.760 kb on + strandat 1406.765 kb on + strandat 1406.766 kb on - strandat 1406.766 kb on - strandat 1406.767 kb on + strandat 1406.767 kb on + strandat 1406.767 kb on + strandat 1406.822 kb on + strandat 1406.825 kb on - strandat 1406.841 kb on + strandat 1406.857 kb on - strandat 1406.858 kb on + strandat 1406.859 kb on - strandat 1406.859 kb on - strandat 1406.859 kb on - strandat 1406.860 kb on + strandat 1406.860 kb on + strandat 1406.860 kb on + strandat 1406.863 kb on + strandat 1406.864 kb on - strandat 1406.865 kb on + strandat 1406.875 kb on - strandat 1406.876 kb on + strandat 1406.876 kb on + strandat 1406.876 kb on + strandat 1406.880 kb on + strandat 1406.880 kb on + strandat 1406.892 kb on + strandat 1406.927 kb on + strandat 1407.082 kb on + strand, within MMJJ_RS07680at 1407.110 kb on + strand, within MMJJ_RS07680at 1407.120 kb on - strand, within MMJJ_RS07680at 1407.121 kb on + strand, within MMJJ_RS07680at 1407.124 kb on - strand, within MMJJ_RS07680at 1407.190 kb on + strand, within MMJJ_RS07680at 1407.192 kb on + strand, within MMJJ_RS07680at 1407.195 kb on - strand, within MMJJ_RS07680at 1407.195 kb on - strand, within MMJJ_RS07680at 1407.200 kb on + strand, within MMJJ_RS07680at 1407.240 kb on - strand, within MMJJ_RS07680at 1407.242 kb on - strand, within MMJJ_RS07680at 1407.243 kb on + strand, within MMJJ_RS07680at 1407.243 kb on + strand, within MMJJ_RS07680at 1407.251 kb on + strand, within MMJJ_RS07680at 1407.251 kb on + strand, within MMJJ_RS07680at 1407.251 kb on + strand, within MMJJ_RS07680at 1407.374 kb on - strand, within MMJJ_RS07680at 1407.375 kb on + strand, within MMJJ_RS07680at 1407.411 kb on + strand, within MMJJ_RS07680at 1407.414 kb on - strand, within MMJJ_RS07680at 1407.414 kb on - strand, within MMJJ_RS07680at 1407.414 kb on - strand, within MMJJ_RS07680at 1407.459 kb on - strand, within MMJJ_RS07680at 1407.517 kb on + strand, within MMJJ_RS07680at 1407.520 kb on - strand, within MMJJ_RS07680at 1407.520 kb on - strand, within MMJJ_RS07680at 1407.521 kb on + strand, within MMJJ_RS07680at 1407.521 kb on + strand, within MMJJ_RS07680at 1407.521 kb on + strand, within MMJJ_RS07680at 1407.528 kb on - strand, within MMJJ_RS07680at 1407.529 kb on + strand, within MMJJ_RS07680at 1407.560 kb on + strand, within MMJJ_RS07680at 1407.581 kb on + strand, within MMJJ_RS07680at 1407.751 kb on + strand, within MMJJ_RS07680at 1407.754 kb on - strand, within MMJJ_RS07680at 1407.755 kb on + strand, within MMJJ_RS07680at 1407.798 kb on - strand, within MMJJ_RS07680at 1407.799 kb on + strand, within MMJJ_RS07680at 1407.831 kb on - strand, within MMJJ_RS07680at 1407.833 kb on - strand, within MMJJ_RS07680at 1407.834 kb on + strand, within MMJJ_RS07680at 1407.837 kb on + strand, within MMJJ_RS07680at 1407.919 kb on - strand, within MMJJ_RS07680at 1407.930 kb on - strand, within MMJJ_RS07680at 1407.930 kb on - strand, within MMJJ_RS07680at 1407.931 kb on + strand, within MMJJ_RS07680at 1407.936 kb on - strand, within MMJJ_RS07680at 1407.936 kb on - strand, within MMJJ_RS07680at 1407.982 kb on - strand, within MMJJ_RS07680at 1407.983 kb on + strand, within MMJJ_RS07680at 1408.072 kb on + strandat 1408.081 kb on - strandat 1408.087 kb on - strandat 1408.087 kb on - strandat 1408.088 kb on + strandat 1408.095 kb on - strandat 1408.096 kb on + strandat 1408.126 kb on - strandat 1408.126 kb on - strandat 1408.127 kb on + strandat 1408.127 kb on + strandat 1408.137 kb on + strandat 1408.137 kb on + strandat 1408.184 kb on - strandat 1408.185 kb on + strandat 1408.201 kb on + strandat 1408.201 kb on + strandat 1408.210 kb on + strandat 1408.210 kb on + strandat 1408.305 kb on + strandat 1408.305 kb on + strandat 1408.311 kb on - strandat 1408.311 kb on - strandat 1408.312 kb on + strandat 1408.312 kb on + strandat 1408.312 kb on + strandat 1408.322 kb on + strandat 1408.362 kb on - strand, within MMJJ_RS07685at 1408.367 kb on - strand, within MMJJ_RS07685at 1408.368 kb on + strand, within MMJJ_RS07685at 1408.432 kb on - strand, within MMJJ_RS07685at 1408.441 kb on + strand, within MMJJ_RS07685at 1408.450 kb on + strand, within MMJJ_RS07685at 1408.476 kb on + strand, within MMJJ_RS07685at 1408.520 kb on - strand, within MMJJ_RS07685at 1408.543 kb on - strand, within MMJJ_RS07685at 1408.570 kb on + strand, within MMJJ_RS07685at 1408.644 kb on - strand, within MMJJ_RS07685at 1408.644 kb on - strand, within MMJJ_RS07685at 1408.649 kb on + strand, within MMJJ_RS07685at 1408.649 kb on + strand, within MMJJ_RS07685at 1408.659 kb on + strand, within MMJJ_RS07685at 1408.680 kb on + strand, within MMJJ_RS07685at 1408.680 kb on + strand, within MMJJ_RS07685at 1408.701 kb on - strand, within MMJJ_RS07685at 1408.775 kb on + strand, within MMJJ_RS07685at 1408.787 kb on - strand, within MMJJ_RS07685at 1408.883 kb on + strand, within MMJJ_RS07685at 1408.893 kb on + strand, within MMJJ_RS07685at 1408.916 kb on + strand, within MMJJ_RS07685at 1408.972 kb on - strand, within MMJJ_RS07685at 1408.973 kb on + strand, within MMJJ_RS07685at 1408.992 kb on + strand, within MMJJ_RS07685at 1409.029 kb on + strand, within MMJJ_RS07685at 1409.040 kb on - strand, within MMJJ_RS07685at 1409.040 kb on - strand, within MMJJ_RS07685at 1409.040 kb on - strand, within MMJJ_RS07685at 1409.041 kb on + strand, within MMJJ_RS07685at 1409.041 kb on + strand, within MMJJ_RS07685at 1409.041 kb on + strand, within MMJJ_RS07685at 1409.046 kb on - strand, within MMJJ_RS07685at 1409.046 kb on - strand, within MMJJ_RS07685at 1409.061 kb on + strand, within MMJJ_RS07685at 1409.061 kb on + strand, within MMJJ_RS07685at 1409.139 kb on + strand, within MMJJ_RS07685

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM D-glucosamine
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1,405,859 + MMJJ_RS07675 0.31 -1.4
1,405,883 - MMJJ_RS07675 0.33 +0.5
1,405,884 + MMJJ_RS07675 0.33 -0.2
1,405,884 + MMJJ_RS07675 0.33 -0.9
1,405,884 + MMJJ_RS07675 0.33 -0.1
1,405,898 - MMJJ_RS07675 0.34 -1.6
1,405,898 - MMJJ_RS07675 0.34 -0.6
1,405,899 + MMJJ_RS07675 0.34 -0.5
1,405,899 + MMJJ_RS07675 0.34 +1.0
1,405,899 + MMJJ_RS07675 0.34 -0.0
1,405,911 + MMJJ_RS07675 0.35 +1.6
1,405,911 + MMJJ_RS07675 0.35 +0.1
1,406,079 + MMJJ_RS07675 0.47 +1.3
1,406,079 + MMJJ_RS07675 0.47 -0.4
1,406,236 - MMJJ_RS07675 0.58 -0.7
1,406,237 + MMJJ_RS07675 0.58 -0.7
1,406,259 + MMJJ_RS07675 0.60 -0.2
1,406,259 + MMJJ_RS07675 0.60 -0.6
1,406,261 + MMJJ_RS07675 0.60 +0.8
1,406,323 - MMJJ_RS07675 0.64 +1.3
1,406,408 + MMJJ_RS07675 0.70 -1.2
1,406,499 + MMJJ_RS07675 0.77 +0.8
1,406,532 - MMJJ_RS07675 0.79 -2.6
1,406,532 - MMJJ_RS07675 0.79 +0.7
1,406,555 + MMJJ_RS07675 0.81 -0.9
1,406,680 - MMJJ_RS07675 0.90 +0.4
1,406,709 + +0.6
1,406,745 + -0.5
1,406,759 - -1.0
1,406,759 - -0.6
1,406,760 + +1.1
1,406,760 + +1.6
1,406,765 + +0.0
1,406,766 - +0.4
1,406,766 - -0.7
1,406,767 + -0.8
1,406,767 + +0.9
1,406,767 + +1.0
1,406,822 + -1.1
1,406,825 - +0.5
1,406,841 + -1.2
1,406,857 - +0.2
1,406,858 + +1.0
1,406,859 - -0.7
1,406,859 - -1.0
1,406,859 - -1.3
1,406,860 + -0.6
1,406,860 + +0.4
1,406,860 + -0.6
1,406,863 + -1.1
1,406,864 - +0.8
1,406,865 + +0.7
1,406,875 - +1.0
1,406,876 + -0.1
1,406,876 + -0.1
1,406,876 + -0.1
1,406,880 + +1.1
1,406,880 + -0.2
1,406,892 + -0.6
1,406,927 + -2.4
1,407,082 + MMJJ_RS07680 0.18 -1.8
1,407,110 + MMJJ_RS07680 0.20 -2.5
1,407,120 - MMJJ_RS07680 0.21 -3.3
1,407,121 + MMJJ_RS07680 0.21 -2.1
1,407,124 - MMJJ_RS07680 0.21 -2.5
1,407,190 + MMJJ_RS07680 0.26 -1.2
1,407,192 + MMJJ_RS07680 0.26 -0.4
1,407,195 - MMJJ_RS07680 0.27 -2.1
1,407,195 - MMJJ_RS07680 0.27 -2.6
1,407,200 + MMJJ_RS07680 0.27 -1.0
1,407,240 - MMJJ_RS07680 0.30 +0.3
1,407,242 - MMJJ_RS07680 0.30 -0.7
1,407,243 + MMJJ_RS07680 0.30 -1.9
1,407,243 + MMJJ_RS07680 0.30 -2.8
1,407,251 + MMJJ_RS07680 0.31 -1.8
1,407,251 + MMJJ_RS07680 0.31 -0.4
1,407,251 + MMJJ_RS07680 0.31 -0.9
1,407,374 - MMJJ_RS07680 0.40 -1.1
1,407,375 + MMJJ_RS07680 0.40 -1.5
1,407,411 + MMJJ_RS07680 0.43 -2.4
1,407,414 - MMJJ_RS07680 0.43 -2.5
1,407,414 - MMJJ_RS07680 0.43 -1.9
1,407,414 - MMJJ_RS07680 0.43 -1.6
1,407,459 - MMJJ_RS07680 0.47 -1.7
1,407,517 + MMJJ_RS07680 0.51 -0.9
1,407,520 - MMJJ_RS07680 0.51 -0.9
1,407,520 - MMJJ_RS07680 0.51 -1.4
1,407,521 + MMJJ_RS07680 0.51 -1.2
1,407,521 + MMJJ_RS07680 0.51 -2.9
1,407,521 + MMJJ_RS07680 0.51 -3.6
1,407,528 - MMJJ_RS07680 0.52 -0.7
1,407,529 + MMJJ_RS07680 0.52 -1.7
1,407,560 + MMJJ_RS07680 0.54 -1.8
1,407,581 + MMJJ_RS07680 0.56 -1.4
1,407,751 + MMJJ_RS07680 0.69 -0.9
1,407,754 - MMJJ_RS07680 0.69 -1.7
1,407,755 + MMJJ_RS07680 0.69 -1.1
1,407,798 - MMJJ_RS07680 0.72 -2.1
1,407,799 + MMJJ_RS07680 0.72 -2.8
1,407,831 - MMJJ_RS07680 0.75 -1.7
1,407,833 - MMJJ_RS07680 0.75 -2.2
1,407,834 + MMJJ_RS07680 0.75 -1.7
1,407,837 + MMJJ_RS07680 0.75 -1.1
1,407,919 - MMJJ_RS07680 0.82 -1.3
1,407,930 - MMJJ_RS07680 0.82 -2.3
1,407,930 - MMJJ_RS07680 0.82 -0.4
1,407,931 + MMJJ_RS07680 0.82 -1.7
1,407,936 - MMJJ_RS07680 0.83 -1.8
1,407,936 - MMJJ_RS07680 0.83 -2.4
1,407,982 - MMJJ_RS07680 0.86 -2.7
1,407,983 + MMJJ_RS07680 0.86 -1.1
1,408,072 + -3.3
1,408,081 - -1.9
1,408,087 - +0.1
1,408,087 - -0.9
1,408,088 + -1.4
1,408,095 - -3.1
1,408,096 + -2.0
1,408,126 - -1.1
1,408,126 - -1.2
1,408,127 + -1.4
1,408,127 + -2.4
1,408,137 + -3.1
1,408,137 + +0.9
1,408,184 - +0.8
1,408,185 + +2.4
1,408,201 + +0.1
1,408,201 + +0.5
1,408,210 + -3.3
1,408,210 + -0.1
1,408,305 + +0.6
1,408,305 + -0.6
1,408,311 - -0.2
1,408,311 - -0.6
1,408,312 + -1.0
1,408,312 + -1.3
1,408,312 + -0.8
1,408,322 + -1.7
1,408,362 - MMJJ_RS07685 0.11 -0.9
1,408,367 - MMJJ_RS07685 0.11 +0.5
1,408,368 + MMJJ_RS07685 0.11 -1.5
1,408,432 - MMJJ_RS07685 0.15 -0.5
1,408,441 + MMJJ_RS07685 0.16 +0.7
1,408,450 + MMJJ_RS07685 0.16 +0.8
1,408,476 + MMJJ_RS07685 0.18 +0.5
1,408,520 - MMJJ_RS07685 0.21 +0.5
1,408,543 - MMJJ_RS07685 0.22 +0.0
1,408,570 + MMJJ_RS07685 0.24 +0.7
1,408,644 - MMJJ_RS07685 0.29 -0.8
1,408,644 - MMJJ_RS07685 0.29 -0.9
1,408,649 + MMJJ_RS07685 0.29 -1.1
1,408,649 + MMJJ_RS07685 0.29 +1.3
1,408,659 + MMJJ_RS07685 0.30 +0.9
1,408,680 + MMJJ_RS07685 0.31 -1.0
1,408,680 + MMJJ_RS07685 0.31 -0.8
1,408,701 - MMJJ_RS07685 0.32 +0.6
1,408,775 + MMJJ_RS07685 0.37 +0.7
1,408,787 - MMJJ_RS07685 0.38 +0.1
1,408,883 + MMJJ_RS07685 0.44 -0.2
1,408,893 + MMJJ_RS07685 0.45 +0.0
1,408,916 + MMJJ_RS07685 0.46 +0.6
1,408,972 - MMJJ_RS07685 0.50 -1.7
1,408,973 + MMJJ_RS07685 0.50 +0.6
1,408,992 + MMJJ_RS07685 0.51 +1.0
1,409,029 + MMJJ_RS07685 0.53 -0.3
1,409,040 - MMJJ_RS07685 0.54 +0.0
1,409,040 - MMJJ_RS07685 0.54 -0.7
1,409,040 - MMJJ_RS07685 0.54 -0.7
1,409,041 + MMJJ_RS07685 0.54 -0.1
1,409,041 + MMJJ_RS07685 0.54 +0.5
1,409,041 + MMJJ_RS07685 0.54 +0.9
1,409,046 - MMJJ_RS07685 0.54 -0.3
1,409,046 - MMJJ_RS07685 0.54 -0.5
1,409,061 + MMJJ_RS07685 0.55 -0.5
1,409,061 + MMJJ_RS07685 0.55 +1.1
1,409,139 + MMJJ_RS07685 0.60 +0.1

Or see this region's nucleotide sequence