Experiment: H2 N-free with 10mM D-glucosamine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS07675 and MMJJ_RS07680 are separated by 23 nucleotides MMJJ_RS07680 and MMJJ_RS07685 are separated by 31 nucleotides
MMJJ_RS07675: MMJJ_RS07675 - ADP-specific phosphofructokinase, at 1,405,430 to 1,406,821
_RS07675
MMJJ_RS07680: MMJJ_RS07680 - glucose-6-phosphate isomerase, at 1,406,845 to 1,408,161
_RS07680
MMJJ_RS07685: MMJJ_RS07685 - glycogen/starch synthase, at 1,408,193 to 1,409,761
_RS07685
Position (kb)
1406
1407
1408
1409 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1405.859 kb on + strand, within MMJJ_RS07675 at 1405.883 kb on - strand, within MMJJ_RS07675 at 1405.884 kb on + strand, within MMJJ_RS07675 at 1405.884 kb on + strand, within MMJJ_RS07675 at 1405.884 kb on + strand, within MMJJ_RS07675 at 1405.898 kb on - strand, within MMJJ_RS07675 at 1405.898 kb on - strand, within MMJJ_RS07675 at 1405.899 kb on + strand, within MMJJ_RS07675 at 1405.899 kb on + strand, within MMJJ_RS07675 at 1405.899 kb on + strand, within MMJJ_RS07675 at 1405.911 kb on + strand, within MMJJ_RS07675 at 1405.911 kb on + strand, within MMJJ_RS07675 at 1406.079 kb on + strand, within MMJJ_RS07675 at 1406.079 kb on + strand, within MMJJ_RS07675 at 1406.236 kb on - strand, within MMJJ_RS07675 at 1406.237 kb on + strand, within MMJJ_RS07675 at 1406.259 kb on + strand, within MMJJ_RS07675 at 1406.259 kb on + strand, within MMJJ_RS07675 at 1406.261 kb on + strand, within MMJJ_RS07675 at 1406.323 kb on - strand, within MMJJ_RS07675 at 1406.408 kb on + strand, within MMJJ_RS07675 at 1406.499 kb on + strand, within MMJJ_RS07675 at 1406.532 kb on - strand, within MMJJ_RS07675 at 1406.532 kb on - strand, within MMJJ_RS07675 at 1406.555 kb on + strand, within MMJJ_RS07675 at 1406.680 kb on - strand, within MMJJ_RS07675 at 1406.709 kb on + strand at 1406.745 kb on + strand at 1406.759 kb on - strand at 1406.759 kb on - strand at 1406.760 kb on + strand at 1406.760 kb on + strand at 1406.765 kb on + strand at 1406.766 kb on - strand at 1406.766 kb on - strand at 1406.767 kb on + strand at 1406.767 kb on + strand at 1406.767 kb on + strand at 1406.822 kb on + strand at 1406.825 kb on - strand at 1406.841 kb on + strand at 1406.857 kb on - strand at 1406.858 kb on + strand at 1406.859 kb on - strand at 1406.859 kb on - strand at 1406.859 kb on - strand at 1406.860 kb on + strand at 1406.860 kb on + strand at 1406.860 kb on + strand at 1406.863 kb on + strand at 1406.864 kb on - strand at 1406.865 kb on + strand at 1406.875 kb on - strand at 1406.876 kb on + strand at 1406.876 kb on + strand at 1406.876 kb on + strand at 1406.880 kb on + strand at 1406.880 kb on + strand at 1406.892 kb on + strand at 1406.927 kb on + strand at 1407.082 kb on + strand, within MMJJ_RS07680 at 1407.110 kb on + strand, within MMJJ_RS07680 at 1407.120 kb on - strand, within MMJJ_RS07680 at 1407.121 kb on + strand, within MMJJ_RS07680 at 1407.124 kb on - strand, within MMJJ_RS07680 at 1407.190 kb on + strand, within MMJJ_RS07680 at 1407.192 kb on + strand, within MMJJ_RS07680 at 1407.195 kb on - strand, within MMJJ_RS07680 at 1407.195 kb on - strand, within MMJJ_RS07680 at 1407.200 kb on + strand, within MMJJ_RS07680 at 1407.240 kb on - strand, within MMJJ_RS07680 at 1407.242 kb on - strand, within MMJJ_RS07680 at 1407.243 kb on + strand, within MMJJ_RS07680 at 1407.243 kb on + strand, within MMJJ_RS07680 at 1407.251 kb on + strand, within MMJJ_RS07680 at 1407.251 kb on + strand, within MMJJ_RS07680 at 1407.251 kb on + strand, within MMJJ_RS07680 at 1407.374 kb on - strand, within MMJJ_RS07680 at 1407.375 kb on + strand, within MMJJ_RS07680 at 1407.411 kb on + strand, within MMJJ_RS07680 at 1407.414 kb on - strand, within MMJJ_RS07680 at 1407.414 kb on - strand, within MMJJ_RS07680 at 1407.414 kb on - strand, within MMJJ_RS07680 at 1407.459 kb on - strand, within MMJJ_RS07680 at 1407.517 kb on + strand, within MMJJ_RS07680 at 1407.520 kb on - strand, within MMJJ_RS07680 at 1407.520 kb on - strand, within MMJJ_RS07680 at 1407.521 kb on + strand, within MMJJ_RS07680 at 1407.521 kb on + strand, within MMJJ_RS07680 at 1407.521 kb on + strand, within MMJJ_RS07680 at 1407.528 kb on - strand, within MMJJ_RS07680 at 1407.529 kb on + strand, within MMJJ_RS07680 at 1407.560 kb on + strand, within MMJJ_RS07680 at 1407.581 kb on + strand, within MMJJ_RS07680 at 1407.751 kb on + strand, within MMJJ_RS07680 at 1407.754 kb on - strand, within MMJJ_RS07680 at 1407.755 kb on + strand, within MMJJ_RS07680 at 1407.798 kb on - strand, within MMJJ_RS07680 at 1407.799 kb on + strand, within MMJJ_RS07680 at 1407.831 kb on - strand, within MMJJ_RS07680 at 1407.833 kb on - strand, within MMJJ_RS07680 at 1407.834 kb on + strand, within MMJJ_RS07680 at 1407.837 kb on + strand, within MMJJ_RS07680 at 1407.919 kb on - strand, within MMJJ_RS07680 at 1407.930 kb on - strand, within MMJJ_RS07680 at 1407.930 kb on - strand, within MMJJ_RS07680 at 1407.931 kb on + strand, within MMJJ_RS07680 at 1407.936 kb on - strand, within MMJJ_RS07680 at 1407.936 kb on - strand, within MMJJ_RS07680 at 1407.982 kb on - strand, within MMJJ_RS07680 at 1407.983 kb on + strand, within MMJJ_RS07680 at 1408.072 kb on + strand at 1408.081 kb on - strand at 1408.087 kb on - strand at 1408.087 kb on - strand at 1408.088 kb on + strand at 1408.095 kb on - strand at 1408.096 kb on + strand at 1408.126 kb on - strand at 1408.126 kb on - strand at 1408.127 kb on + strand at 1408.127 kb on + strand at 1408.137 kb on + strand at 1408.137 kb on + strand at 1408.184 kb on - strand at 1408.185 kb on + strand at 1408.201 kb on + strand at 1408.201 kb on + strand at 1408.210 kb on + strand at 1408.210 kb on + strand at 1408.305 kb on + strand at 1408.305 kb on + strand at 1408.311 kb on - strand at 1408.311 kb on - strand at 1408.312 kb on + strand at 1408.312 kb on + strand at 1408.312 kb on + strand at 1408.322 kb on + strand at 1408.362 kb on - strand, within MMJJ_RS07685 at 1408.367 kb on - strand, within MMJJ_RS07685 at 1408.368 kb on + strand, within MMJJ_RS07685 at 1408.432 kb on - strand, within MMJJ_RS07685 at 1408.441 kb on + strand, within MMJJ_RS07685 at 1408.450 kb on + strand, within MMJJ_RS07685 at 1408.476 kb on + strand, within MMJJ_RS07685 at 1408.520 kb on - strand, within MMJJ_RS07685 at 1408.543 kb on - strand, within MMJJ_RS07685 at 1408.570 kb on + strand, within MMJJ_RS07685 at 1408.644 kb on - strand, within MMJJ_RS07685 at 1408.644 kb on - strand, within MMJJ_RS07685 at 1408.649 kb on + strand, within MMJJ_RS07685 at 1408.649 kb on + strand, within MMJJ_RS07685 at 1408.659 kb on + strand, within MMJJ_RS07685 at 1408.680 kb on + strand, within MMJJ_RS07685 at 1408.680 kb on + strand, within MMJJ_RS07685 at 1408.701 kb on - strand, within MMJJ_RS07685 at 1408.775 kb on + strand, within MMJJ_RS07685 at 1408.787 kb on - strand, within MMJJ_RS07685 at 1408.883 kb on + strand, within MMJJ_RS07685 at 1408.893 kb on + strand, within MMJJ_RS07685 at 1408.916 kb on + strand, within MMJJ_RS07685 at 1408.972 kb on - strand, within MMJJ_RS07685 at 1408.973 kb on + strand, within MMJJ_RS07685 at 1408.992 kb on + strand, within MMJJ_RS07685 at 1409.029 kb on + strand, within MMJJ_RS07685 at 1409.040 kb on - strand, within MMJJ_RS07685 at 1409.040 kb on - strand, within MMJJ_RS07685 at 1409.040 kb on - strand, within MMJJ_RS07685 at 1409.041 kb on + strand, within MMJJ_RS07685 at 1409.041 kb on + strand, within MMJJ_RS07685 at 1409.041 kb on + strand, within MMJJ_RS07685 at 1409.046 kb on - strand, within MMJJ_RS07685 at 1409.046 kb on - strand, within MMJJ_RS07685 at 1409.061 kb on + strand, within MMJJ_RS07685 at 1409.061 kb on + strand, within MMJJ_RS07685 at 1409.139 kb on + strand, within MMJJ_RS07685
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM D-glucosamine remove 1,405,859 + MMJJ_RS07675 0.31 -1.4 1,405,883 - MMJJ_RS07675 0.33 +0.5 1,405,884 + MMJJ_RS07675 0.33 -0.2 1,405,884 + MMJJ_RS07675 0.33 -0.9 1,405,884 + MMJJ_RS07675 0.33 -0.1 1,405,898 - MMJJ_RS07675 0.34 -1.6 1,405,898 - MMJJ_RS07675 0.34 -0.6 1,405,899 + MMJJ_RS07675 0.34 -0.5 1,405,899 + MMJJ_RS07675 0.34 +1.0 1,405,899 + MMJJ_RS07675 0.34 -0.0 1,405,911 + MMJJ_RS07675 0.35 +1.6 1,405,911 + MMJJ_RS07675 0.35 +0.1 1,406,079 + MMJJ_RS07675 0.47 +1.3 1,406,079 + MMJJ_RS07675 0.47 -0.4 1,406,236 - MMJJ_RS07675 0.58 -0.7 1,406,237 + MMJJ_RS07675 0.58 -0.7 1,406,259 + MMJJ_RS07675 0.60 -0.2 1,406,259 + MMJJ_RS07675 0.60 -0.6 1,406,261 + MMJJ_RS07675 0.60 +0.8 1,406,323 - MMJJ_RS07675 0.64 +1.3 1,406,408 + MMJJ_RS07675 0.70 -1.2 1,406,499 + MMJJ_RS07675 0.77 +0.8 1,406,532 - MMJJ_RS07675 0.79 -2.6 1,406,532 - MMJJ_RS07675 0.79 +0.7 1,406,555 + MMJJ_RS07675 0.81 -0.9 1,406,680 - MMJJ_RS07675 0.90 +0.4 1,406,709 + +0.6 1,406,745 + -0.5 1,406,759 - -1.0 1,406,759 - -0.6 1,406,760 + +1.1 1,406,760 + +1.6 1,406,765 + +0.0 1,406,766 - +0.4 1,406,766 - -0.7 1,406,767 + -0.8 1,406,767 + +0.9 1,406,767 + +1.0 1,406,822 + -1.1 1,406,825 - +0.5 1,406,841 + -1.2 1,406,857 - +0.2 1,406,858 + +1.0 1,406,859 - -0.7 1,406,859 - -1.0 1,406,859 - -1.3 1,406,860 + -0.6 1,406,860 + +0.4 1,406,860 + -0.6 1,406,863 + -1.1 1,406,864 - +0.8 1,406,865 + +0.7 1,406,875 - +1.0 1,406,876 + -0.1 1,406,876 + -0.1 1,406,876 + -0.1 1,406,880 + +1.1 1,406,880 + -0.2 1,406,892 + -0.6 1,406,927 + -2.4 1,407,082 + MMJJ_RS07680 0.18 -1.8 1,407,110 + MMJJ_RS07680 0.20 -2.5 1,407,120 - MMJJ_RS07680 0.21 -3.3 1,407,121 + MMJJ_RS07680 0.21 -2.1 1,407,124 - MMJJ_RS07680 0.21 -2.5 1,407,190 + MMJJ_RS07680 0.26 -1.2 1,407,192 + MMJJ_RS07680 0.26 -0.4 1,407,195 - MMJJ_RS07680 0.27 -2.1 1,407,195 - MMJJ_RS07680 0.27 -2.6 1,407,200 + MMJJ_RS07680 0.27 -1.0 1,407,240 - MMJJ_RS07680 0.30 +0.3 1,407,242 - MMJJ_RS07680 0.30 -0.7 1,407,243 + MMJJ_RS07680 0.30 -1.9 1,407,243 + MMJJ_RS07680 0.30 -2.8 1,407,251 + MMJJ_RS07680 0.31 -1.8 1,407,251 + MMJJ_RS07680 0.31 -0.4 1,407,251 + MMJJ_RS07680 0.31 -0.9 1,407,374 - MMJJ_RS07680 0.40 -1.1 1,407,375 + MMJJ_RS07680 0.40 -1.5 1,407,411 + MMJJ_RS07680 0.43 -2.4 1,407,414 - MMJJ_RS07680 0.43 -2.5 1,407,414 - MMJJ_RS07680 0.43 -1.9 1,407,414 - MMJJ_RS07680 0.43 -1.6 1,407,459 - MMJJ_RS07680 0.47 -1.7 1,407,517 + MMJJ_RS07680 0.51 -0.9 1,407,520 - MMJJ_RS07680 0.51 -0.9 1,407,520 - MMJJ_RS07680 0.51 -1.4 1,407,521 + MMJJ_RS07680 0.51 -1.2 1,407,521 + MMJJ_RS07680 0.51 -2.9 1,407,521 + MMJJ_RS07680 0.51 -3.6 1,407,528 - MMJJ_RS07680 0.52 -0.7 1,407,529 + MMJJ_RS07680 0.52 -1.7 1,407,560 + MMJJ_RS07680 0.54 -1.8 1,407,581 + MMJJ_RS07680 0.56 -1.4 1,407,751 + MMJJ_RS07680 0.69 -0.9 1,407,754 - MMJJ_RS07680 0.69 -1.7 1,407,755 + MMJJ_RS07680 0.69 -1.1 1,407,798 - MMJJ_RS07680 0.72 -2.1 1,407,799 + MMJJ_RS07680 0.72 -2.8 1,407,831 - MMJJ_RS07680 0.75 -1.7 1,407,833 - MMJJ_RS07680 0.75 -2.2 1,407,834 + MMJJ_RS07680 0.75 -1.7 1,407,837 + MMJJ_RS07680 0.75 -1.1 1,407,919 - MMJJ_RS07680 0.82 -1.3 1,407,930 - MMJJ_RS07680 0.82 -2.3 1,407,930 - MMJJ_RS07680 0.82 -0.4 1,407,931 + MMJJ_RS07680 0.82 -1.7 1,407,936 - MMJJ_RS07680 0.83 -1.8 1,407,936 - MMJJ_RS07680 0.83 -2.4 1,407,982 - MMJJ_RS07680 0.86 -2.7 1,407,983 + MMJJ_RS07680 0.86 -1.1 1,408,072 + -3.3 1,408,081 - -1.9 1,408,087 - +0.1 1,408,087 - -0.9 1,408,088 + -1.4 1,408,095 - -3.1 1,408,096 + -2.0 1,408,126 - -1.1 1,408,126 - -1.2 1,408,127 + -1.4 1,408,127 + -2.4 1,408,137 + -3.1 1,408,137 + +0.9 1,408,184 - +0.8 1,408,185 + +2.4 1,408,201 + +0.1 1,408,201 + +0.5 1,408,210 + -3.3 1,408,210 + -0.1 1,408,305 + +0.6 1,408,305 + -0.6 1,408,311 - -0.2 1,408,311 - -0.6 1,408,312 + -1.0 1,408,312 + -1.3 1,408,312 + -0.8 1,408,322 + -1.7 1,408,362 - MMJJ_RS07685 0.11 -0.9 1,408,367 - MMJJ_RS07685 0.11 +0.5 1,408,368 + MMJJ_RS07685 0.11 -1.5 1,408,432 - MMJJ_RS07685 0.15 -0.5 1,408,441 + MMJJ_RS07685 0.16 +0.7 1,408,450 + MMJJ_RS07685 0.16 +0.8 1,408,476 + MMJJ_RS07685 0.18 +0.5 1,408,520 - MMJJ_RS07685 0.21 +0.5 1,408,543 - MMJJ_RS07685 0.22 +0.0 1,408,570 + MMJJ_RS07685 0.24 +0.7 1,408,644 - MMJJ_RS07685 0.29 -0.8 1,408,644 - MMJJ_RS07685 0.29 -0.9 1,408,649 + MMJJ_RS07685 0.29 -1.1 1,408,649 + MMJJ_RS07685 0.29 +1.3 1,408,659 + MMJJ_RS07685 0.30 +0.9 1,408,680 + MMJJ_RS07685 0.31 -1.0 1,408,680 + MMJJ_RS07685 0.31 -0.8 1,408,701 - MMJJ_RS07685 0.32 +0.6 1,408,775 + MMJJ_RS07685 0.37 +0.7 1,408,787 - MMJJ_RS07685 0.38 +0.1 1,408,883 + MMJJ_RS07685 0.44 -0.2 1,408,893 + MMJJ_RS07685 0.45 +0.0 1,408,916 + MMJJ_RS07685 0.46 +0.6 1,408,972 - MMJJ_RS07685 0.50 -1.7 1,408,973 + MMJJ_RS07685 0.50 +0.6 1,408,992 + MMJJ_RS07685 0.51 +1.0 1,409,029 + MMJJ_RS07685 0.53 -0.3 1,409,040 - MMJJ_RS07685 0.54 +0.0 1,409,040 - MMJJ_RS07685 0.54 -0.7 1,409,040 - MMJJ_RS07685 0.54 -0.7 1,409,041 + MMJJ_RS07685 0.54 -0.1 1,409,041 + MMJJ_RS07685 0.54 +0.5 1,409,041 + MMJJ_RS07685 0.54 +0.9 1,409,046 - MMJJ_RS07685 0.54 -0.3 1,409,046 - MMJJ_RS07685 0.54 -0.5 1,409,061 + MMJJ_RS07685 0.55 -0.5 1,409,061 + MMJJ_RS07685 0.55 +1.1 1,409,139 + MMJJ_RS07685 0.60 +0.1
Or see this region's nucleotide sequence