Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07680

Experiment: H2 N-free with 10mM D-glucosamine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 10mM D-glucosamine
1,405,859	+		MMJJ_RS07675	0.31	-1.4
1,405,883	-		MMJJ_RS07675	0.33	+0.5
1,405,884	+		MMJJ_RS07675	0.33	-0.2
1,405,884	+		MMJJ_RS07675	0.33	-0.9
1,405,884	+		MMJJ_RS07675	0.33	-0.1
1,405,898	-		MMJJ_RS07675	0.34	-1.6
1,405,898	-		MMJJ_RS07675	0.34	-0.6
1,405,899	+		MMJJ_RS07675	0.34	-0.5
1,405,899	+		MMJJ_RS07675	0.34	+1.0
1,405,899	+		MMJJ_RS07675	0.34	-0.0
1,405,911	+		MMJJ_RS07675	0.35	+1.6
1,405,911	+		MMJJ_RS07675	0.35	+0.1
1,406,079	+		MMJJ_RS07675	0.47	+1.3
1,406,079	+		MMJJ_RS07675	0.47	-0.4
1,406,236	-		MMJJ_RS07675	0.58	-0.7
1,406,237	+		MMJJ_RS07675	0.58	-0.7
1,406,259	+		MMJJ_RS07675	0.60	-0.2
1,406,259	+		MMJJ_RS07675	0.60	-0.6
1,406,261	+		MMJJ_RS07675	0.60	+0.8
1,406,323	-		MMJJ_RS07675	0.64	+1.3
1,406,408	+		MMJJ_RS07675	0.70	-1.2
1,406,499	+		MMJJ_RS07675	0.77	+0.8
1,406,532	-		MMJJ_RS07675	0.79	-2.6
1,406,532	-		MMJJ_RS07675	0.79	+0.7
1,406,555	+		MMJJ_RS07675	0.81	-0.9
1,406,680	-		MMJJ_RS07675	0.90	+0.4
1,406,709	+				+0.6
1,406,745	+				-0.5
1,406,759	-				-1.0
1,406,759	-				-0.6
1,406,760	+				+1.1
1,406,760	+				+1.6
1,406,765	+				+0.0
1,406,766	-				+0.4
1,406,766	-				-0.7
1,406,767	+				-0.8
1,406,767	+				+0.9
1,406,767	+				+1.0
1,406,822	+				-1.1
1,406,825	-				+0.5
1,406,841	+				-1.2
1,406,857	-				+0.2
1,406,858	+				+1.0
1,406,859	-				-0.7
1,406,859	-				-1.0
1,406,859	-				-1.3
1,406,860	+				-0.6
1,406,860	+				+0.4
1,406,860	+				-0.6
1,406,863	+				-1.1
1,406,864	-				+0.8
1,406,865	+				+0.7
1,406,875	-				+1.0
1,406,876	+				-0.1
1,406,876	+				-0.1
1,406,876	+				-0.1
1,406,880	+				+1.1
1,406,880	+				-0.2
1,406,892	+				-0.6
1,406,927	+				-2.4
1,407,082	+		MMJJ_RS07680	0.18	-1.8
1,407,110	+		MMJJ_RS07680	0.20	-2.5
1,407,120	-		MMJJ_RS07680	0.21	-3.3
1,407,121	+		MMJJ_RS07680	0.21	-2.1
1,407,124	-		MMJJ_RS07680	0.21	-2.5
1,407,190	+		MMJJ_RS07680	0.26	-1.2
1,407,192	+		MMJJ_RS07680	0.26	-0.4
1,407,195	-		MMJJ_RS07680	0.27	-2.1
1,407,195	-		MMJJ_RS07680	0.27	-2.6
1,407,200	+		MMJJ_RS07680	0.27	-1.0
1,407,240	-		MMJJ_RS07680	0.30	+0.3
1,407,242	-		MMJJ_RS07680	0.30	-0.7
1,407,243	+		MMJJ_RS07680	0.30	-1.9
1,407,243	+		MMJJ_RS07680	0.30	-2.8
1,407,251	+		MMJJ_RS07680	0.31	-1.8
1,407,251	+		MMJJ_RS07680	0.31	-0.4
1,407,251	+		MMJJ_RS07680	0.31	-0.9
1,407,374	-		MMJJ_RS07680	0.40	-1.1
1,407,375	+		MMJJ_RS07680	0.40	-1.5
1,407,411	+		MMJJ_RS07680	0.43	-2.4
1,407,414	-		MMJJ_RS07680	0.43	-2.5
1,407,414	-		MMJJ_RS07680	0.43	-1.9
1,407,414	-		MMJJ_RS07680	0.43	-1.6
1,407,459	-		MMJJ_RS07680	0.47	-1.7
1,407,517	+		MMJJ_RS07680	0.51	-0.9
1,407,520	-		MMJJ_RS07680	0.51	-0.9
1,407,520	-		MMJJ_RS07680	0.51	-1.4
1,407,521	+		MMJJ_RS07680	0.51	-1.2
1,407,521	+		MMJJ_RS07680	0.51	-2.9
1,407,521	+		MMJJ_RS07680	0.51	-3.6
1,407,528	-		MMJJ_RS07680	0.52	-0.7
1,407,529	+		MMJJ_RS07680	0.52	-1.7
1,407,560	+		MMJJ_RS07680	0.54	-1.8
1,407,581	+		MMJJ_RS07680	0.56	-1.4
1,407,751	+		MMJJ_RS07680	0.69	-0.9
1,407,754	-		MMJJ_RS07680	0.69	-1.7
1,407,755	+		MMJJ_RS07680	0.69	-1.1
1,407,798	-		MMJJ_RS07680	0.72	-2.1
1,407,799	+		MMJJ_RS07680	0.72	-2.8
1,407,831	-		MMJJ_RS07680	0.75	-1.7
1,407,833	-		MMJJ_RS07680	0.75	-2.2
1,407,834	+		MMJJ_RS07680	0.75	-1.7
1,407,837	+		MMJJ_RS07680	0.75	-1.1
1,407,919	-		MMJJ_RS07680	0.82	-1.3
1,407,930	-		MMJJ_RS07680	0.82	-2.3
1,407,930	-		MMJJ_RS07680	0.82	-0.4
1,407,931	+		MMJJ_RS07680	0.82	-1.7
1,407,936	-		MMJJ_RS07680	0.83	-1.8
1,407,936	-		MMJJ_RS07680	0.83	-2.4
1,407,982	-		MMJJ_RS07680	0.86	-2.7
1,407,983	+		MMJJ_RS07680	0.86	-1.1
1,408,072	+				-3.3
1,408,081	-				-1.9
1,408,087	-				+0.1
1,408,087	-				-0.9
1,408,088	+				-1.4
1,408,095	-				-3.1
1,408,096	+				-2.0
1,408,126	-				-1.1
1,408,126	-				-1.2
1,408,127	+				-1.4
1,408,127	+				-2.4
1,408,137	+				-3.1
1,408,137	+				+0.9
1,408,184	-				+0.8
1,408,185	+				+2.4
1,408,201	+				+0.1
1,408,201	+				+0.5
1,408,210	+				-3.3
1,408,210	+				-0.1
1,408,305	+				+0.6
1,408,305	+				-0.6
1,408,311	-				-0.2
1,408,311	-				-0.6
1,408,312	+				-1.0
1,408,312	+				-1.3
1,408,312	+				-0.8
1,408,322	+				-1.7
1,408,362	-		MMJJ_RS07685	0.11	-0.9
1,408,367	-		MMJJ_RS07685	0.11	+0.5
1,408,368	+		MMJJ_RS07685	0.11	-1.5
1,408,432	-		MMJJ_RS07685	0.15	-0.5
1,408,441	+		MMJJ_RS07685	0.16	+0.7
1,408,450	+		MMJJ_RS07685	0.16	+0.8
1,408,476	+		MMJJ_RS07685	0.18	+0.5
1,408,520	-		MMJJ_RS07685	0.21	+0.5
1,408,543	-		MMJJ_RS07685	0.22	+0.0
1,408,570	+		MMJJ_RS07685	0.24	+0.7
1,408,644	-		MMJJ_RS07685	0.29	-0.8
1,408,644	-		MMJJ_RS07685	0.29	-0.9
1,408,649	+		MMJJ_RS07685	0.29	-1.1
1,408,649	+		MMJJ_RS07685	0.29	+1.3
1,408,659	+		MMJJ_RS07685	0.30	+0.9
1,408,680	+		MMJJ_RS07685	0.31	-1.0
1,408,680	+		MMJJ_RS07685	0.31	-0.8
1,408,701	-		MMJJ_RS07685	0.32	+0.6
1,408,775	+		MMJJ_RS07685	0.37	+0.7
1,408,787	-		MMJJ_RS07685	0.38	+0.1
1,408,883	+		MMJJ_RS07685	0.44	-0.2
1,408,893	+		MMJJ_RS07685	0.45	+0.0
1,408,916	+		MMJJ_RS07685	0.46	+0.6
1,408,972	-		MMJJ_RS07685	0.50	-1.7
1,408,973	+		MMJJ_RS07685	0.50	+0.6
1,408,992	+		MMJJ_RS07685	0.51	+1.0
1,409,029	+		MMJJ_RS07685	0.53	-0.3
1,409,040	-		MMJJ_RS07685	0.54	+0.0
1,409,040	-		MMJJ_RS07685	0.54	-0.7
1,409,040	-		MMJJ_RS07685	0.54	-0.7
1,409,041	+		MMJJ_RS07685	0.54	-0.1
1,409,041	+		MMJJ_RS07685	0.54	+0.5
1,409,041	+		MMJJ_RS07685	0.54	+0.9
1,409,046	-		MMJJ_RS07685	0.54	-0.3
1,409,046	-		MMJJ_RS07685	0.54	-0.5
1,409,061	+		MMJJ_RS07685	0.55	-0.5
1,409,061	+		MMJJ_RS07685	0.55	+1.1
1,409,139	+		MMJJ_RS07685	0.60	+0.1