Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04930

Experiment: H2 N-free with 10mM D-glucosamine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 N-free with 10mM D-glucosamine
915,505	+		MMJJ_RS04925	0.29	+1.3
915,572	-		MMJJ_RS04925	0.35	+0.2
915,604	-		MMJJ_RS04925	0.38	+1.9
915,645	+		MMJJ_RS04925	0.41	+1.1
915,665	+		MMJJ_RS04925	0.43	+0.7
915,665	+		MMJJ_RS04925	0.43	-0.9
915,676	-		MMJJ_RS04925	0.44	-0.8
915,766	-		MMJJ_RS04925	0.51	+0.0
915,766	-		MMJJ_RS04925	0.51	-0.2
915,766	-		MMJJ_RS04925	0.51	-0.3
915,766	-		MMJJ_RS04925	0.51	-0.5
915,767	+		MMJJ_RS04925	0.52	+1.3
915,770	-		MMJJ_RS04925	0.52	+0.8
915,770	-		MMJJ_RS04925	0.52	-0.1
915,802	-		MMJJ_RS04925	0.55	-1.0
915,803	+		MMJJ_RS04925	0.55	+1.0
915,815	+		MMJJ_RS04925	0.56	-0.6
915,829	-		MMJJ_RS04925	0.57	-1.6
915,830	+		MMJJ_RS04925	0.57	+0.5
915,844	-		MMJJ_RS04925	0.58	+0.7
915,961	-		MMJJ_RS04925	0.68	+0.3
915,971	-		MMJJ_RS04925	0.69	-1.1
915,971	-		MMJJ_RS04925	0.69	+0.0
915,971	-		MMJJ_RS04925	0.69	-0.6
915,972	+		MMJJ_RS04925	0.69	+0.1
915,972	+		MMJJ_RS04925	0.69	-0.9
915,973	-		MMJJ_RS04925	0.69	+0.5
915,973	-		MMJJ_RS04925	0.69	+0.9
915,976	-		MMJJ_RS04925	0.69	-0.5
915,977	+		MMJJ_RS04925	0.69	-0.8
915,985	-		MMJJ_RS04925	0.70	-1.3
915,994	-		MMJJ_RS04925	0.71	+0.8
915,994	-		MMJJ_RS04925	0.71	-0.3
915,994	-		MMJJ_RS04925	0.71	+1.3
915,994	-		MMJJ_RS04925	0.71	+1.2
915,995	+		MMJJ_RS04925	0.71	+1.2
915,995	+		MMJJ_RS04925	0.71	-0.6
915,998	-		MMJJ_RS04925	0.71	+0.1
915,999	+		MMJJ_RS04925	0.71	+0.3
916,048	+		MMJJ_RS04925	0.75	+0.3
916,048	+		MMJJ_RS04925	0.75	-0.2
916,057	-		MMJJ_RS04925	0.76	+1.0
916,060	-		MMJJ_RS04925	0.76	+0.3
916,063	-		MMJJ_RS04925	0.77	-0.7
916,081	-		MMJJ_RS04925	0.78	-1.7
916,081	-		MMJJ_RS04925	0.78	+0.0
916,082	+		MMJJ_RS04925	0.78	+0.6
916,085	-		MMJJ_RS04925	0.79	+0.1
916,196	-		MMJJ_RS04925	0.88	+1.0
916,207	-		MMJJ_RS04925	0.89	+1.3
916,207	-		MMJJ_RS04925	0.89	-0.9
916,207	-		MMJJ_RS04925	0.89	-0.5
916,271	-				-0.0
916,272	+				+0.1
916,374	-				-0.0
916,376	-				-2.8
916,492	-		MMJJ_RS04930	0.12	-2.4
916,492	-		MMJJ_RS04930	0.12	-2.3
916,493	+		MMJJ_RS04930	0.12	-4.0
916,493	+		MMJJ_RS04930	0.12	-1.9
916,495	+		MMJJ_RS04930	0.12	-0.7
916,495	+		MMJJ_RS04930	0.12	-2.3
916,495	+		MMJJ_RS04930	0.12	+1.7
916,505	-		MMJJ_RS04930	0.13	-4.9
916,550	+		MMJJ_RS04930	0.17	-2.4
916,675	-		MMJJ_RS04930	0.28	-3.7
916,738	-		MMJJ_RS04930	0.33	-1.3
916,738	-		MMJJ_RS04930	0.33	-1.6
916,864	-		MMJJ_RS04930	0.44	-2.8
916,865	+		MMJJ_RS04930	0.44	-2.5
916,865	+		MMJJ_RS04930	0.44	-2.2
916,870	+		MMJJ_RS04930	0.45	-0.9
916,959	-		MMJJ_RS04930	0.52	-4.1
916,996	-		MMJJ_RS04930	0.55	-1.8
916,996	-		MMJJ_RS04930	0.55	-0.3
916,996	-		MMJJ_RS04930	0.55	-0.7
916,997	+		MMJJ_RS04930	0.56	-2.0
917,003	+		MMJJ_RS04930	0.56	-1.9
917,015	+		MMJJ_RS04930	0.57	-0.6
917,015	+				+0.1
917,018	-		MMJJ_RS04930	0.57	-2.2
917,018	-		MMJJ_RS04930	0.57	-4.1
917,019	+		MMJJ_RS04930	0.57	-1.9
917,019	+		MMJJ_RS04930	0.57	-3.0
917,019	+		MMJJ_RS04930	0.57	-3.6
917,039	-		MMJJ_RS04930	0.59	-2.1
917,039	-		MMJJ_RS04930	0.59	-3.3
917,039	-		MMJJ_RS04930	0.59	-1.7
917,039	-		MMJJ_RS04930	0.59	-1.1
917,039	-		MMJJ_RS04930	0.59	-2.9
917,040	+		MMJJ_RS04930	0.59	-3.2
917,043	-				+0.1
917,044	+		MMJJ_RS04930	0.60	-2.9
917,044	+		MMJJ_RS04930	0.60	-4.4
917,044	+		MMJJ_RS04930	0.60	-1.9
917,053	-		MMJJ_RS04930	0.60	-3.4
917,053	-		MMJJ_RS04930	0.60	-3.2
917,108	+		MMJJ_RS04930	0.65	-0.3
917,117	-		MMJJ_RS04930	0.66	-3.7
917,117	-		MMJJ_RS04930	0.66	-3.1
917,118	+		MMJJ_RS04930	0.66	-2.2
917,118	+		MMJJ_RS04930	0.66	-2.2
917,154	-		MMJJ_RS04930	0.69	-2.0
917,156	-		MMJJ_RS04930	0.69	-2.7
917,208	-		MMJJ_RS04930	0.74	-2.8
917,209	+		MMJJ_RS04930	0.74	-3.1
917,220	-		MMJJ_RS04930	0.75	-1.5
917,221	+		MMJJ_RS04930	0.75	-2.9
917,354	+		MMJJ_RS04930	0.87	-2.7
917,476	-				-1.7
917,483	-				-3.0
917,484	+				-3.8
917,484	+				-1.3
917,521	-				-2.8
917,521	-				-2.0
917,528	-				-1.7
917,528	-				-2.5
917,528	-				-0.5
917,528	-				-1.9
917,529	+				-1.7
917,529	+				-0.9
917,530	-				-0.9
917,530	-				-1.7
917,531	+				-3.0
917,553	-				-2.2
917,553	-				-2.0
917,554	+				-0.9
917,554	+				-3.6
917,554	+				+0.5
917,554	+				-4.1
917,557	-				+0.1
917,557	-				-0.8
917,557	-				+0.6
917,558	+				+0.8
917,558	+				+0.6
917,558	+				+1.9
917,558	+				-0.7
917,558	+				+0.4
917,571	-				+0.5
917,572	+				+0.9
917,572	+				-0.9
917,581	-				+0.7
917,582	+				-0.2
917,592	+				-0.6
917,597	-				+0.6
917,597	-				+0.1
917,597	-				+0.8
917,597	-				-0.8
917,598	+				+0.6
917,598	+				+0.4
917,601	-				+1.4
917,601	-				-1.3
917,601	-				-0.5
917,602	+				-0.1
917,602	+				+0.6
917,602	+				-0.3
917,608	-				+1.3
917,617	-				+0.3
917,617	-				-0.1
917,617	-				+1.3
917,618	+				+0.3
917,618	+				-0.6
917,646	-				-0.6
917,646	-				+0.4
917,647	+				-1.6
917,647	+				+0.6
917,650	-				+1.0
917,651	+				+1.9
917,655	-				-0.7
917,656	+				+0.5
917,656	+				+0.7
917,656	+				-1.6
917,657	-				-1.6
917,657	-				-1.6
917,657	-				-0.6
917,658	+				+0.7
917,659	-				+0.4
917,659	-				-0.6
917,659	-				+0.5
917,660	+				-0.8
917,660	+				-0.6
917,660	+				+0.7
917,660	+				+0.4
917,660	+				-0.8
917,660	+				+0.7
917,681	+		MMJJ_RS04935	0.15	+2.3
917,715	-		MMJJ_RS04935	0.32	+0.5
917,716	+		MMJJ_RS04935	0.33	-0.2
917,722	-		MMJJ_RS04935	0.36	-0.1
917,744	+		MMJJ_RS04935	0.47	+0.2
917,796	-		MMJJ_RS04935	0.73	-0.8
917,796	-		MMJJ_RS04935	0.73	+0.4
917,797	+		MMJJ_RS04935	0.74	+1.1
917,805	-		MMJJ_RS04935	0.78	-2.4
917,805	-		MMJJ_RS04935	0.78	+0.3
917,847	+				+0.2
917,856	-				-1.7
917,856	-				-1.9
917,865	+				+0.5
917,865	+				+0.2
917,870	+				+0.1
917,870	+				-0.2
917,896	-				-0.2
917,897	+				-1.3
917,989	+		MMJJ_RS04940	0.20	+0.7
918,037	-		MMJJ_RS04940	0.29	-1.6
918,037	-		MMJJ_RS04940	0.29	-0.6
918,072	-		MMJJ_RS04940	0.35	+1.3
918,072	-		MMJJ_RS04940	0.35	+0.4
918,072	-		MMJJ_RS04940	0.35	+0.8
918,072	-		MMJJ_RS04940	0.35	-1.2
918,073	+		MMJJ_RS04940	0.35	-0.3
918,073	+		MMJJ_RS04940	0.35	-2.4
918,073	+		MMJJ_RS04940	0.35	+0.9
918,076	+		MMJJ_RS04940	0.36	-1.0
918,092	-		MMJJ_RS04940	0.39	+0.1
918,103	-		MMJJ_RS04940	0.41	+0.4
918,104	+		MMJJ_RS04940	0.41	-0.8
918,104	+		MMJJ_RS04940	0.41	-1.3
918,105	-		MMJJ_RS04940	0.41	-1.0
918,105	-		MMJJ_RS04940	0.41	+0.3
918,105	-		MMJJ_RS04940	0.41	-0.7
918,105	-		MMJJ_RS04940	0.41	-0.1
918,105	-		MMJJ_RS04940	0.41	+0.1
918,106	+		MMJJ_RS04940	0.41	+0.7
918,106	+				+9.6
918,141	+		MMJJ_RS04940	0.48	-1.7
918,183	+		MMJJ_RS04940	0.55	-0.4
918,227	-		MMJJ_RS04940	0.63	+1.3
918,228	+		MMJJ_RS04940	0.64	-0.7
918,293	-		MMJJ_RS04940	0.75	-0.4
918,293	-		MMJJ_RS04940	0.75	+0.8
918,328	-		MMJJ_RS04940	0.82	-0.0
918,329	+		MMJJ_RS04940	0.82	-1.0
918,347	+		MMJJ_RS04940	0.85	-0.2
918,366	+		MMJJ_RS04940	0.89	+1.4
918,415	-				+0.9
918,415	-				-0.4
918,415	-				+0.1
918,416	+				+1.2
918,446	+				-0.3
918,447	-				-0.8
918,448	+				+0.7
918,452	-				-0.3
918,452	-				+0.3
918,452	-				+0.7
918,452	-				+0.2
918,452	-				-1.1
918,453	+				+0.7
918,453	+				-1.2
918,453	+				-0.8
918,453	+				+0.6
918,453	+				-0.4
918,454	-				-0.9
918,454	-				+0.9
918,455	+				-1.3
918,455	+				-0.8
918,455	+				-0.2
918,455	+				-0.9
918,456	-				-0.2
918,458	-				+0.9
918,458	-				+1.3
918,459	+				+0.2
918,459	+				+0.8
918,467	-				+1.0
918,468	+				+0.6
918,468	+				-1.6
918,469	-				-0.6
918,469	-				-0.7
918,470	+				-1.6
918,470	+				+0.9
918,477	-				+0.5
918,478	+				+1.7
918,479	-				-0.5
918,488	-				-0.3
918,488	-				+0.7
918,489	+				+3.0
918,489	+				+1.6
918,493	-				-0.6
918,493	-				-0.5
918,493	-				-0.1
918,494	+				-0.1
918,495	-				+0.5
918,495	-				+0.3