Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03660

Experiment: H2 N-free with 10mM D-glucosamine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03655 and MMJJ_RS03660 are separated by 0 nucleotidesMMJJ_RS03660 and MMJJ_RS03665 are separated by 132 nucleotides MMJJ_RS03655: MMJJ_RS03655 - replication factor C large subunit, at 682,023 to 683,483 _RS03655 MMJJ_RS03660: MMJJ_RS03660 - DUF447 family protein, at 683,484 to 684,029 _RS03660 MMJJ_RS03665: MMJJ_RS03665 - shikimate kinase, at 684,162 to 685,013 _RS03665 Position (kb) 683 684 685Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 682.512 kb on + strand, within MMJJ_RS03655at 682.732 kb on + strand, within MMJJ_RS03655at 683.067 kb on - strandat 683.297 kb on + strandat 683.485 kb on - strandat 683.494 kb on + strandat 683.608 kb on + strand, within MMJJ_RS03660at 683.647 kb on - strand, within MMJJ_RS03660at 683.712 kb on + strand, within MMJJ_RS03660at 683.869 kb on - strand, within MMJJ_RS03660at 683.882 kb on - strand, within MMJJ_RS03660at 683.887 kb on + strand, within MMJJ_RS03660at 683.893 kb on - strand, within MMJJ_RS03660at 683.893 kb on - strand, within MMJJ_RS03660at 683.894 kb on + strandat 683.938 kb on - strand, within MMJJ_RS03660at 684.030 kb on + strandat 684.030 kb on + strandat 684.043 kb on + strandat 684.056 kb on - strandat 684.056 kb on - strandat 684.057 kb on + strandat 684.057 kb on + strandat 684.060 kb on + strandat 684.070 kb on + strandat 684.070 kb on + strandat 684.071 kb on - strandat 684.071 kb on - strandat 684.071 kb on - strandat 684.074 kb on - strandat 684.075 kb on + strandat 684.077 kb on - strandat 684.077 kb on - strandat 684.077 kb on - strandat 684.077 kb on - strandat 684.078 kb on + strandat 684.078 kb on + strandat 684.079 kb on - strandat 684.082 kb on - strandat 684.082 kb on - strandat 684.082 kb on - strandat 684.082 kb on - strandat 684.083 kb on + strandat 684.085 kb on - strandat 684.085 kb on - strandat 684.085 kb on - strandat 684.086 kb on + strandat 684.086 kb on + strandat 684.086 kb on + strandat 684.086 kb on + strandat 684.086 kb on + strandat 684.086 kb on + strandat 684.098 kb on - strandat 684.099 kb on + strandat 684.099 kb on + strandat 684.103 kb on - strandat 684.983 kb on - strandat 684.984 kb on + strandat 685.012 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM D-glucosamine
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682,512 + MMJJ_RS03655 0.33 +3.9
682,732 + MMJJ_RS03655 0.49 -3.0
683,067 - +0.7
683,297 + +0.7
683,485 - -0.3
683,494 + -0.1
683,608 + MMJJ_RS03660 0.23 -1.1
683,647 - MMJJ_RS03660 0.30 -0.3
683,712 + MMJJ_RS03660 0.42 -2.1
683,869 - MMJJ_RS03660 0.71 -2.2
683,882 - MMJJ_RS03660 0.73 -1.1
683,887 + MMJJ_RS03660 0.74 -1.4
683,893 - MMJJ_RS03660 0.75 -1.6
683,893 - MMJJ_RS03660 0.75 -0.6
683,894 + -0.6
683,938 - MMJJ_RS03660 0.83 -1.6
684,030 + -0.8
684,030 + -0.8
684,043 + -1.4
684,056 - -2.3
684,056 - -0.6
684,057 + +0.0
684,057 + -0.4
684,060 + -0.4
684,070 + -1.1
684,070 + -0.7
684,071 - -0.8
684,071 - -3.4
684,071 - -0.2
684,074 - -0.8
684,075 + -0.3
684,077 - -0.3
684,077 - -1.8
684,077 - -0.2
684,077 - -1.6
684,078 + -1.3
684,078 + +0.0
684,079 - +0.5
684,082 - -2.1
684,082 - +0.1
684,082 - +0.7
684,082 - -0.8
684,083 + -0.0
684,085 - -0.2
684,085 - +0.6
684,085 - +0.6
684,086 + +0.4
684,086 + -1.0
684,086 + -1.1
684,086 + -1.3
684,086 + -1.8
684,086 + -0.7
684,098 - -2.4
684,099 + -0.3
684,099 + -0.3
684,103 - -1.4
684,983 - -0.8
684,984 + -0.8
685,012 + +2.2

Or see this region's nucleotide sequence