Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16140

Experiment: R2A with Calcium chloride 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Calcium chloride 250 mM
3,552,507	+				-1.3
3,552,508	-				-0.5
3,552,781	+		LRK54_RS16135	0.29	-0.1
3,552,781	+		LRK54_RS16135	0.29	+0.2
3,552,781	+		LRK54_RS16135	0.29	-1.2
3,552,781	+		LRK54_RS16135	0.29	+0.2
3,552,781	+		LRK54_RS16135	0.29	+0.8
3,552,781	+		LRK54_RS16135	0.29	-0.9
3,552,781	+		LRK54_RS16135	0.29	+0.0
3,552,781	+		LRK54_RS16135	0.29	-1.1
3,552,781	+		LRK54_RS16135	0.29	+0.0
3,552,781	+		LRK54_RS16135	0.29	-0.1
3,552,781	+		LRK54_RS16135	0.29	-0.4
3,552,781	+		LRK54_RS16135	0.29	-0.9
3,552,781	+		LRK54_RS16135	0.29	+0.7
3,552,781	+		LRK54_RS16135	0.29	+1.2
3,552,782	-		LRK54_RS16135	0.29	+0.5
3,552,782	-		LRK54_RS16135	0.29	-0.1
3,552,782	-		LRK54_RS16135	0.29	-0.2
3,552,782	-		LRK54_RS16135	0.29	-0.1
3,552,782	-		LRK54_RS16135	0.29	+1.5
3,552,782	-		LRK54_RS16135	0.29	+0.2
3,552,782	-		LRK54_RS16135	0.29	+1.5
3,552,782	-		LRK54_RS16135	0.29	+0.2
3,552,782	-		LRK54_RS16135	0.29	+0.5
3,552,782	-		LRK54_RS16135	0.29	+0.9
3,552,782	-		LRK54_RS16135	0.29	-0.5
3,552,782	-		LRK54_RS16135	0.29	+0.7
3,553,136	-		LRK54_RS16135	0.74	-0.8
3,553,370	+				-1.3
3,553,370	+				+0.7
3,553,370	+				+0.2
3,553,370	+				-0.7
3,553,370	+				-0.3
3,553,370	+				+0.4
3,553,370	+				-0.8
3,553,371	-				-1.3
3,553,371	-				-0.8
3,553,371	-				-0.7
3,553,371	-				+3.1
3,553,371	-				-1.3
3,553,371	-				+1.2
3,553,371	-				+0.2
3,553,371	-				+1.4
3,553,371	-				-1.2
3,553,371	-				-0.4
3,553,371	-				-1.5
3,553,371	-				-2.2
3,553,375	+				-0.3
3,553,375	+				+0.3
3,553,375	+				-1.7
3,553,375	+				+0.1
3,553,375	+				-0.6
3,553,375	+				+1.3
3,553,376	-				-2.3
3,553,376	-				-1.0
3,553,376	-				-0.3
3,553,376	-				-0.8
3,553,376	-				+1.3
3,553,376	-				-0.5
3,553,376	-				+0.9
3,553,389	+				+0.2
3,553,389	+				+0.7
3,553,389	+				-0.1
3,553,389	+				-2.1
3,553,389	+				-1.8
3,553,389	+				-0.8
3,553,390	-				-2.7
3,553,390	-				-2.1
3,553,390	-				-0.5
3,553,390	-				+0.9
3,553,390	-				+0.2
3,553,431	+				-0.3
3,553,431	+				-1.7
3,553,431	+				+0.2
3,553,431	+				-0.6
3,553,431	+				-0.1
3,553,431	+				-1.0
3,553,432	-				+0.5
3,553,432	-				-0.3
3,553,432	-				+0.4
3,553,432	-				-0.6
3,553,432	-				-1.8
3,553,432	-				+0.9
3,553,432	-				-0.7
3,553,432	-				-0.7
3,553,432	-				+0.2
3,553,432	-				-2.3
3,553,432	-				-0.6
3,553,493	+				+0.5
3,553,493	+				-0.9
3,553,493	+				-0.2
3,553,493	+				+0.2
3,553,493	+				+0.3
3,553,493	+				-0.1
3,553,493	+				+1.0
3,553,493	+				+0.3
3,553,493	+				+0.0
3,553,493	+				+0.2
3,553,493	+				-0.1
3,553,494	-				-2.6
3,553,494	-				-0.3
3,553,494	-				-0.8
3,553,494	-				-0.4
3,553,517	+				-0.2
3,553,517	+				+1.7
3,553,517	+				-2.1
3,553,517	+				-0.4
3,553,517	+				+0.7
3,553,517	+				-1.4
3,553,517	+				+1.0
3,553,517	+				-1.0
3,553,517	+				-1.2
3,553,517	+				+1.0
3,553,517	+				+0.7
3,553,517	+				+0.0
3,553,517	+				+1.7
3,553,517	+				-0.6
3,553,517	+				+0.7
3,553,517	+				-0.8
3,553,517	+				-1.4
3,553,517	+				-2.1
3,553,517	+				-0.8
3,553,517	+				-2.3
3,553,517	+				+0.7
3,553,518	-				-1.1
3,553,518	-				-0.5
3,553,518	-				-2.4
3,553,518	-				-1.4
3,553,518	-				+1.9
3,553,518	-				-1.2
3,553,518	-				+0.5
3,553,518	-				-1.0
3,553,518	-				+0.6
3,553,518	-				+1.2
3,553,518	-				+0.6
3,553,518	-				+0.4
3,553,541	+				-0.6
3,553,542	-				-0.8
3,553,542	-				+0.2
3,553,639	+		LRK54_RS16140	0.25	+0.6
3,553,639	+		LRK54_RS16140	0.25	-1.4
3,553,639	+		LRK54_RS16140	0.25	+0.5
3,553,639	+		LRK54_RS16140	0.25	-0.2
3,553,639	+		LRK54_RS16140	0.25	-0.2
3,553,640	-		LRK54_RS16140	0.25	-1.0
3,553,640	-		LRK54_RS16140	0.25	-1.5
3,553,640	-		LRK54_RS16140	0.25	-2.3
3,553,640	-		LRK54_RS16140	0.25	-1.1
3,553,640	-		LRK54_RS16140	0.25	-0.6
3,553,640	-		LRK54_RS16140	0.25	-0.0
3,553,722	+		LRK54_RS16140	0.39	-0.2
3,553,722	+		LRK54_RS16140	0.39	-2.3
3,553,722	+		LRK54_RS16140	0.39	+0.2
3,553,722	+		LRK54_RS16140	0.39	-1.8
3,553,723	-		LRK54_RS16140	0.39	+3.3
3,553,723	-		LRK54_RS16140	0.39	+1.2
3,553,858	+		LRK54_RS16140	0.62	+1.3
3,553,859	-		LRK54_RS16140	0.63	+0.2
3,553,859	-		LRK54_RS16140	0.63	-0.2
3,553,963	+		LRK54_RS16140	0.80	+0.7
3,553,963	+		LRK54_RS16140	0.80	-0.3
3,553,963	+		LRK54_RS16140	0.80	-0.8
3,553,964	-		LRK54_RS16140	0.81	-0.2
3,553,975	+		LRK54_RS16140	0.82	-0.7
3,553,975	+		LRK54_RS16140	0.82	-0.2
3,553,976	-		LRK54_RS16140	0.83	+0.1
3,553,981	+		LRK54_RS16140	0.84	+0.6
3,553,981	+		LRK54_RS16140	0.84	-2.9
3,553,981	+		LRK54_RS16140	0.84	+2.3
3,553,981	+		LRK54_RS16140	0.84	+1.5
3,553,981	+		LRK54_RS16140	0.84	-0.4
3,553,981	+		LRK54_RS16140	0.84	-0.5
3,553,981	+		LRK54_RS16140	0.84	-1.1
3,553,981	+		LRK54_RS16140	0.84	-0.3
3,553,981	+		LRK54_RS16140	0.84	-1.1
3,553,981	+		LRK54_RS16140	0.84	+0.6
3,553,981	+		LRK54_RS16140	0.84	+0.2
3,553,981	+		LRK54_RS16140	0.84	+0.1
3,553,981	+		LRK54_RS16140	0.84	+0.0
3,553,981	+		LRK54_RS16140	0.84	-0.8
3,553,981	+		LRK54_RS16140	0.84	-1.6
3,553,981	+		LRK54_RS16140	0.84	-0.1
3,553,982	-		LRK54_RS16140	0.84	-0.6
3,553,982	-		LRK54_RS16140	0.84	+0.2
3,553,982	-		LRK54_RS16140	0.84	-0.3
3,553,982	-		LRK54_RS16140	0.84	+0.9
3,553,982	-		LRK54_RS16140	0.84	+0.0
3,553,982	-		LRK54_RS16140	0.84	-0.8
3,553,982	-		LRK54_RS16140	0.84	+1.2
3,553,982	-		LRK54_RS16140	0.84	-0.2
3,554,185	-		LRK54_RS16145	0.17	+0.7
3,554,202	+		LRK54_RS16145	0.20	-0.5
3,554,202	+		LRK54_RS16145	0.20	-1.0
3,554,202	+		LRK54_RS16145	0.20	+0.2
3,554,202	+		LRK54_RS16145	0.20	-0.3
3,554,202	+		LRK54_RS16145	0.20	-0.3
3,554,202	+		LRK54_RS16145	0.20	-0.1
3,554,202	+		LRK54_RS16145	0.20	-0.4
3,554,202	+		LRK54_RS16145	0.20	+1.7
3,554,202	+		LRK54_RS16145	0.20	+0.7
3,554,202	+		LRK54_RS16145	0.20	+0.4
3,554,202	+		LRK54_RS16145	0.20	+0.5
3,554,202	+		LRK54_RS16145	0.20	-0.0
3,554,202	+		LRK54_RS16145	0.20	-0.6
3,554,202	+		LRK54_RS16145	0.20	+0.1
3,554,202	+		LRK54_RS16145	0.20	-0.3
3,554,202	+		LRK54_RS16145	0.20	+0.2
3,554,202	+		LRK54_RS16145	0.20	+0.0
3,554,202	+		LRK54_RS16145	0.20	-0.3
3,554,203	-		LRK54_RS16145	0.20	-1.0
3,554,203	-		LRK54_RS16145	0.20	-1.6
3,554,203	-		LRK54_RS16145	0.20	+0.4
3,554,203	-		LRK54_RS16145	0.20	-1.8
3,554,203	-		LRK54_RS16145	0.20	-0.6
3,554,203	-		LRK54_RS16145	0.20	+0.4
3,554,203	-		LRK54_RS16145	0.20	-0.3
3,554,203	-		LRK54_RS16145	0.20	-1.2
3,554,203	-		LRK54_RS16145	0.20	-0.3
3,554,203	-		LRK54_RS16145	0.20	-1.4
3,554,203	-		LRK54_RS16145	0.20	+0.4
3,554,203	-		LRK54_RS16145	0.20	-0.8
3,554,203	-		LRK54_RS16145	0.20	+1.3
3,554,203	-		LRK54_RS16145	0.20	+0.4
3,554,203	-		LRK54_RS16145	0.20	-1.1
3,554,203	-		LRK54_RS16145	0.20	+0.7
3,554,214	+		LRK54_RS16145	0.22	-0.8
3,554,292	+		LRK54_RS16145	0.38	-0.3
3,554,292	+		LRK54_RS16145	0.38	+0.9
3,554,292	+		LRK54_RS16145	0.38	-1.5
3,554,292	+		LRK54_RS16145	0.38	-0.4
3,554,292	+		LRK54_RS16145	0.38	-0.3
3,554,292	+		LRK54_RS16145	0.38	+0.2
3,554,293	-		LRK54_RS16145	0.38	-1.1
3,554,293	-		LRK54_RS16145	0.38	-0.7
3,554,293	-		LRK54_RS16145	0.38	-1.8
3,554,293	-		LRK54_RS16145	0.38	-0.1
3,554,293	-		LRK54_RS16145	0.38	+0.4
3,554,293	-		LRK54_RS16145	0.38	-0.3
3,554,293	-		LRK54_RS16145	0.38	-0.4
3,554,293	-		LRK54_RS16145	0.38	-0.3
3,554,293	-		LRK54_RS16145	0.38	-1.7
3,554,511	+		LRK54_RS16145	0.82	-0.1
3,554,512	-		LRK54_RS16145	0.83	-1.4
3,554,512	-		LRK54_RS16145	0.83	-0.3
3,554,559	+				-0.6
3,554,559	+				+1.7
3,554,586	+				-0.6
3,554,586	+				+1.2
3,554,586	+				-1.0
3,554,586	+				-1.3
3,554,587	-				+1.9
3,554,587	-				+1.1
3,554,587	-				-2.3
3,554,587	-				-0.6
3,554,599	+				-1.6
3,554,600	-				-0.7
3,554,600	-				-0.9
3,554,607	+				+0.1
3,554,607	+				+0.2
3,554,607	+				-0.8
3,554,607	+				+0.2
3,554,607	+				+0.0
3,554,607	+				-0.7
3,554,607	+				-0.9
3,554,607	+				-0.9
3,554,607	+				-0.5
3,554,607	+				-0.2
3,554,607	+				-2.0
3,554,607	+				-0.9
3,554,607	+				+1.7
3,554,607	+				+0.2
3,554,607	+				-1.3
3,554,607	+				-0.9
3,554,608	-				-2.5
3,554,608	-				-1.6
3,554,608	-				-0.8
3,554,608	-				-0.4
3,554,608	-				-1.3
3,554,608	-				+0.3
3,554,608	-				-2.6
3,554,608	-				-3.3
3,554,608	-				-0.7
3,554,608	-				-1.5
3,554,608	-				-2.4
3,554,608	-				-2.3
3,554,608	-				+0.7
3,554,694	-				-0.9
3,554,694	-				+0.2
3,555,032	+		LRK54_RS16150	0.81	-1.3
3,555,032	+		LRK54_RS16150	0.81	-1.3
3,555,032	+		LRK54_RS16150	0.81	+0.7
3,555,032	+		LRK54_RS16150	0.81	+0.4
3,555,033	-		LRK54_RS16150	0.81	-1.3
3,555,033	-		LRK54_RS16150	0.81	+0.7