Strain Fitness in Pantoea sp. MT58 around IAI47_12870

Experiment: nitrogen source nitrate 5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrate 5mM
2,715,312	+		IAI47_12865	0.37	-0.6
2,715,312	+		IAI47_12865	0.37	-0.2
2,715,320	-		IAI47_12865	0.37	-3.2
2,715,320	-		IAI47_12865	0.37	-0.2
2,715,320	-		IAI47_12865	0.37	-0.8
2,715,402	+		IAI47_12865	0.45	-1.4
2,715,403	-		IAI47_12865	0.45	-1.9
2,715,424	+		IAI47_12865	0.47	-2.1
2,715,425	-		IAI47_12865	0.47	-3.9
2,715,425	-		IAI47_12865	0.47	-2.8
2,715,437	-		IAI47_12865	0.48	-2.1
2,715,470	+		IAI47_12865	0.51	-1.4
2,715,470	+		IAI47_12865	0.51	-3.2
2,715,471	-		IAI47_12865	0.51	-1.7
2,715,498	-		IAI47_12865	0.54	-3.4
2,715,565	+		IAI47_12865	0.60	-1.2
2,715,566	-		IAI47_12865	0.60	-2.3
2,715,583	-		IAI47_12865	0.62	-3.4
2,715,583	-		IAI47_12865	0.62	-1.4
2,715,661	+		IAI47_12865	0.69	-2.1
2,715,661	+		IAI47_12865	0.69	-2.2
2,715,661	+		IAI47_12865	0.69	-1.2
2,715,662	-		IAI47_12865	0.69	-2.3
2,715,662	-		IAI47_12865	0.69	-2.6
2,715,662	-		IAI47_12865	0.69	-3.5
2,715,678	+		IAI47_12865	0.70	-2.1
2,715,678	+		IAI47_12865	0.70	-3.3
2,715,712	+		IAI47_12865	0.74	-0.3
2,715,712	+		IAI47_12865	0.74	-2.5
2,715,712	+		IAI47_12865	0.74	-2.2
2,715,712	+		IAI47_12865	0.74	-1.5
2,715,712	+		IAI47_12865	0.74	-3.6
2,715,712	+		IAI47_12865	0.74	-2.9
2,715,713	-		IAI47_12865	0.74	-1.2
2,715,713	-		IAI47_12865	0.74	-3.0
2,715,713	-		IAI47_12865	0.74	-4.1
2,715,713	-		IAI47_12865	0.74	-3.6
2,715,713	-		IAI47_12865	0.74	-2.2
2,715,713	-		IAI47_12865	0.74	-3.2
2,715,800	-		IAI47_12865	0.82	-2.8
2,715,853	-		IAI47_12865	0.87	-3.8
2,715,860	+		IAI47_12865	0.87	-2.2
2,715,869	+		IAI47_12865	0.88	-2.3
2,715,891	+				-1.9
2,715,891	+				-0.2
2,715,892	-				-0.6
2,715,892	-				-0.8
2,715,899	+				-2.3
2,715,957	+				-3.3
2,715,957	+				-1.6
2,715,977	+				-1.6
2,715,984	-				-2.4
2,716,017	+				-0.2
2,716,017	+				-2.8
2,716,017	+				-2.9
2,716,049	-				-0.2
2,716,049	-				-0.6
2,716,049	-				-2.1
2,716,058	+				-3.8
2,716,058	+				-1.6
2,716,058	+				-1.0
2,716,059	-				+0.3
2,716,059	-				+0.1
2,716,064	+				-0.7
2,716,064	+				-2.6
2,716,064	+				-1.9
2,716,064	+				-2.1
2,716,064	+				-2.7
2,716,065	-				+0.3
2,716,065	-				+0.8
2,716,065	-				+1.2
2,716,076	+				-0.9
2,716,076	+				-0.2
2,716,077	-				-0.1
2,716,077	-				-0.3
2,716,077	-				+0.4
2,716,105	+				-0.2
2,716,106	-				-0.3
2,716,122	+				+0.3
2,716,122	+				+1.0
2,716,122	+				+1.4
2,716,122	+				+0.3
2,716,122	+				-2.6
2,716,122	+				+0.9
2,716,123	-				+0.1
2,716,123	-				-0.5
2,716,123	-				-0.1
2,716,127	+				+0.2
2,716,127	+				-0.6
2,716,127	+				+0.2
2,716,128	-				+0.6
2,716,128	-				+0.7
2,716,128	-				+0.2
2,716,128	-				+1.3
2,716,128	-				+0.5
2,716,128	-				+1.0
2,716,176	+				+0.1
2,716,176	+				-1.6
2,716,177	-				+0.3
2,716,177	-				-2.7
2,716,215	-				+0.3
2,716,215	-				-0.8
2,716,251	+				-0.1
2,716,311	+				+0.2
2,716,311	+				-0.2
2,716,311	+				+0.3
2,716,311	+				+0.4
2,716,312	-				-0.1
2,716,312	-				+0.9
2,716,312	-				-0.2
2,716,327	-				+0.5
2,716,398	+				+0.6
2,716,399	-				+2.4
2,716,399	-				+0.3
2,716,399	-				+0.4
2,716,452	+				-0.3
2,716,453	-				-0.3
2,716,482	+				+0.1
2,716,483	-				+0.6
2,716,557	+		IAI47_12870	0.14	+0.7
2,716,557	+		IAI47_12870	0.14	-0.1
2,716,557	+		IAI47_12870	0.14	+1.5
2,716,558	-		IAI47_12870	0.14	+0.5
2,716,558	-		IAI47_12870	0.14	+1.7
2,716,558	-		IAI47_12870	0.14	+0.1
2,716,558	-		IAI47_12870	0.14	+0.4
2,716,558	-		IAI47_12870	0.14	+0.5
2,716,562	-		IAI47_12870	0.14	+1.1
2,716,618	+		IAI47_12870	0.17	-0.9
2,716,644	-		IAI47_12870	0.19	+0.2
2,716,661	+		IAI47_12870	0.20	+2.0
2,716,662	-		IAI47_12870	0.20	+0.6
2,716,700	-		IAI47_12870	0.22	-2.5
2,716,813	+		IAI47_12870	0.28	-2.4
2,716,813	+		IAI47_12870	0.28	-0.1
2,716,814	-		IAI47_12870	0.28	+0.8
2,716,814	-		IAI47_12870	0.28	-0.1
2,716,827	+		IAI47_12870	0.29	+1.9
2,716,827	+		IAI47_12870	0.29	-0.5
2,716,827	+		IAI47_12870	0.29	+0.9
2,716,827	+		IAI47_12870	0.29	+0.1
2,716,827	+		IAI47_12870	0.29	+1.5
2,716,828	-		IAI47_12870	0.29	-0.2
2,716,828	-		IAI47_12870	0.29	+1.5
2,716,828	-		IAI47_12870	0.29	+2.0
2,716,828	-		IAI47_12870	0.29	-0.1
2,716,843	+		IAI47_12870	0.30	+1.0
2,716,843	+		IAI47_12870	0.30	-0.7
2,716,843	+		IAI47_12870	0.30	+0.8
2,716,843	+		IAI47_12870	0.30	-2.1
2,716,844	-		IAI47_12870	0.30	-0.1
2,716,844	-		IAI47_12870	0.30	+0.6
2,716,844	-		IAI47_12870	0.30	-0.3
2,716,844	-		IAI47_12870	0.30	+0.2
2,716,844	-		IAI47_12870	0.30	+1.4
2,716,921	+		IAI47_12870	0.35	+1.0
2,716,921	+		IAI47_12870	0.35	-0.5
2,716,921	+		IAI47_12870	0.35	+0.2
2,716,922	-		IAI47_12870	0.35	+1.4
2,716,922	-		IAI47_12870	0.35	+0.4
2,716,922	-		IAI47_12870	0.35	+0.5
2,716,922	-		IAI47_12870	0.35	+0.7
2,716,979	+		IAI47_12870	0.38	-0.2
2,716,979	+		IAI47_12870	0.38	-0.7
2,716,979	+		IAI47_12870	0.38	+0.3
2,716,979	+		IAI47_12870	0.38	+1.5
2,716,979	+		IAI47_12870	0.38	+0.5
2,716,979	+		IAI47_12870	0.38	+0.6
2,716,980	-		IAI47_12870	0.38	+0.6
2,716,980	-		IAI47_12870	0.38	+1.4
2,716,980	-		IAI47_12870	0.38	+0.8
2,717,051	-		IAI47_12870	0.42	-0.5
2,717,071	-		IAI47_12870	0.43	+0.2
2,717,075	-		IAI47_12870	0.43	+1.1
2,717,101	-		IAI47_12870	0.45	-0.8
2,717,101	-		IAI47_12870	0.45	-0.3
2,717,298	+		IAI47_12870	0.56	-1.1
2,717,298	+		IAI47_12870	0.56	+0.7
2,717,298	+		IAI47_12870	0.56	+0.6
2,717,298	+		IAI47_12870	0.56	+1.2
2,717,299	-		IAI47_12870	0.56	+0.2
2,717,299	-		IAI47_12870	0.56	+0.0
2,717,299	-		IAI47_12870	0.56	-0.3
2,717,299	-		IAI47_12870	0.56	-0.8
2,717,299	-		IAI47_12870	0.56	+0.4
2,717,299	-		IAI47_12870	0.56	+0.1
2,717,316	+		IAI47_12870	0.57	+0.1
2,717,333	-		IAI47_12870	0.58	-0.9
2,717,422	+		IAI47_12870	0.63	+1.2
2,717,422	+		IAI47_12870	0.63	-0.9
2,717,422	+		IAI47_12870	0.63	-0.2
2,717,422	+		IAI47_12870	0.63	-1.2
2,717,422	+		IAI47_12870	0.63	+0.1
2,717,422	+		IAI47_12870	0.63	+1.2
2,717,423	-		IAI47_12870	0.63	+0.9
2,717,423	-		IAI47_12870	0.63	+0.8
2,717,423	-		IAI47_12870	0.63	-0.3
2,717,423	-		IAI47_12870	0.63	-1.1
2,717,423	-		IAI47_12870	0.63	-0.1
2,717,423	-		IAI47_12870	0.63	-0.5
2,717,424	+		IAI47_12870	0.63	-0.1
2,717,424	+		IAI47_12870	0.63	+3.7
2,717,424	+		IAI47_12870	0.63	-0.8
2,717,424	+		IAI47_12870	0.63	+2.5
2,717,424	+		IAI47_12870	0.63	-0.2
2,717,424	+		IAI47_12870	0.63	-0.2
2,717,425	-		IAI47_12870	0.63	+1.7
2,717,425	-		IAI47_12870	0.63	+1.0
2,717,435	-		IAI47_12870	0.64	-2.6
2,717,435	-		IAI47_12870	0.64	+0.6
2,717,452	+		IAI47_12870	0.65	+0.8
2,717,452	+		IAI47_12870	0.65	-0.9
2,717,453	-		IAI47_12870	0.65	+1.3
2,717,453	-		IAI47_12870	0.65	-0.8
2,717,453	-		IAI47_12870	0.65	-0.4
2,717,487	+		IAI47_12870	0.67	-0.8
2,717,487	+		IAI47_12870	0.67	+0.5
2,717,487	+		IAI47_12870	0.67	+1.8
2,717,487	+		IAI47_12870	0.67	-0.0
2,717,487	+		IAI47_12870	0.67	+1.3
2,717,487	+		IAI47_12870	0.67	+0.8
2,717,488	-		IAI47_12870	0.67	-0.3
2,717,491	+		IAI47_12870	0.67	+0.7
2,717,491	+		IAI47_12870	0.67	+0.0
2,717,491	+		IAI47_12870	0.67	-0.9
2,717,491	+		IAI47_12870	0.67	+0.5
2,717,492	-		IAI47_12870	0.67	+1.2
2,717,492	-		IAI47_12870	0.67	+0.3
2,717,492	-		IAI47_12870	0.67	+0.9
2,717,507	-		IAI47_12870	0.68	+0.6
2,717,520	+		IAI47_12870	0.68	-0.1
2,717,520	+		IAI47_12870	0.68	+0.4
2,717,521	-		IAI47_12870	0.69	+0.0
2,717,521	-		IAI47_12870	0.69	-0.9
2,717,590	+		IAI47_12870	0.72	+0.2
2,717,590	+		IAI47_12870	0.72	+1.9
2,717,590	+		IAI47_12870	0.72	+0.8
2,717,591	-		IAI47_12870	0.73	+0.5
2,717,591	-		IAI47_12870	0.73	+1.0
2,717,591	-		IAI47_12870	0.73	+1.3
2,717,591	-		IAI47_12870	0.73	-0.9
2,717,591	-		IAI47_12870	0.73	+0.0
2,717,689	+		IAI47_12870	0.78	+0.4
2,717,689	+		IAI47_12870	0.78	-0.5
2,717,690	-		IAI47_12870	0.78	-0.7
2,717,690	-		IAI47_12870	0.78	+0.7
2,717,711	+		IAI47_12870	0.79	+0.8
2,717,711	+		IAI47_12870	0.79	+0.7
2,717,711	+		IAI47_12870	0.79	+0.3
2,717,712	-		IAI47_12870	0.79	+0.9
2,717,760	-		IAI47_12870	0.82	-0.9
2,717,785	-		IAI47_12870	0.84	+0.1
2,717,800	-		IAI47_12870	0.84	+0.1
2,717,815	-		IAI47_12870	0.85	-1.6
2,717,818	+		IAI47_12870	0.85	-0.6
2,717,818	+		IAI47_12870	0.85	+2.2
2,717,818	+		IAI47_12870	0.85	+0.4
2,717,818	+		IAI47_12870	0.85	+0.6
2,717,818	+		IAI47_12870	0.85	-0.9
2,717,818	+		IAI47_12870	0.85	+1.2
2,717,818	+		IAI47_12870	0.85	-0.3
2,717,818	+		IAI47_12870	0.85	+1.6
2,717,818	+		IAI47_12870	0.85	+0.6
2,717,818	+		IAI47_12870	0.85	+0.7
2,717,818	+		IAI47_12870	0.85	+0.5
2,717,818	+		IAI47_12870	0.85	-0.8
2,717,819	-		IAI47_12870	0.85	+0.8
2,717,819	-		IAI47_12870	0.85	+2.8
2,717,819	-		IAI47_12870	0.85	-1.2
2,717,819	-		IAI47_12870	0.85	-0.6
2,717,819	-		IAI47_12870	0.85	-0.2
2,717,821	+		IAI47_12870	0.86	+1.4
2,717,821	+		IAI47_12870	0.86	+0.2
2,717,821	+		IAI47_12870	0.86	+0.3
2,717,821	+		IAI47_12870	0.86	+1.0
2,717,881	+		IAI47_12870	0.89	+0.4
2,717,881	+		IAI47_12870	0.89	-0.3
2,717,881	+		IAI47_12870	0.89	+0.3
2,717,881	+		IAI47_12870	0.89	+1.4
2,717,882	-		IAI47_12870	0.89	-0.7
2,717,882	-		IAI47_12870	0.89	-0.7
2,717,882	-		IAI47_12870	0.89	+0.1
2,717,901	+				+0.6
2,717,901	+				-0.0
2,717,901	+				-0.5
2,717,901	+				-0.0
2,717,901	+				+0.4
2,717,901	+				+0.1
2,717,901	+				+0.3
2,717,901	+				+0.7
2,717,902	-				-0.7
2,717,902	-				-0.9
2,717,902	-				+0.2
2,717,902	-				-0.2
2,717,902	-				-1.4
2,717,902	-				+0.7
2,717,905	+				-1.4
2,717,905	+				+1.4
2,717,905	+				+0.2
2,717,905	+				-0.2
2,717,905	+				-1.4
2,717,905	+				+0.6
2,717,905	+				+1.8
2,717,906	-				-0.8
2,717,906	-				-0.3
2,717,906	-				-0.3
2,717,961	+				+2.6
2,718,028	+				-1.1
2,718,029	-				+0.3
2,718,059	-				-1.2
2,718,073	+				+0.2
2,718,073	+				+0.2
2,718,073	+				+0.7
2,718,074	-				+0.4
2,718,074	-				-0.2
2,718,078	+				+0.1
2,718,078	+				+1.1
2,718,078	+				+0.1
2,718,079	-				-1.3
2,718,079	-				-0.7
2,718,079	-				+0.3
2,718,079	-				+0.4
2,718,079	-				-0.7
2,718,079	-				+0.5
2,718,081	-				+1.1
2,718,107	-				+1.0
2,718,107	-				+1.3
2,718,107	-				+0.2
2,718,135	+				+0.4
2,718,135	+				+0.1
2,718,162	+				-0.4
2,718,162	+				+1.0
2,718,162	+				+0.7
2,718,162	+				-0.6
2,718,163	-				+1.6
2,718,163	-				-0.7
2,718,163	-				+1.6
2,718,168	+				+0.1
2,718,168	+				+0.1
2,718,169	-				+0.4
2,718,171	+				+1.4
2,718,202	-				-0.1
2,718,205	+				-0.8
2,718,210	+				+0.8
2,718,210	+				+0.6
2,718,211	-				+0.2
2,718,220	+				+0.9
2,718,221	-				+1.3
2,718,224	+				+0.8
2,718,224	+				-0.9
2,718,224	+				+1.4
2,718,224	+				+0.9
2,718,224	+				-0.3
2,718,225	-				+0.7
2,718,225	-				+1.0
2,718,252	+				-1.1
2,718,253	-				-1.2
2,718,351	-				-0.2
2,718,381	+				+0.1
2,718,396	+				-0.4
2,718,396	+				+0.5
2,718,396	+				+0.1
2,718,396	+				+0.8
2,718,396	+				-0.3
2,718,396	+				-0.1
2,718,396	+				+0.4
2,718,397	-				+1.1
2,718,397	-				-0.6
2,718,398	+				+0.4
2,718,399	-				-1.5
2,718,399	-				+0.7
2,718,409	+				+0.4
2,718,410	-				+0.3
2,718,436	+				+0.3
2,718,437	-				-0.4
2,718,441	+				+0.6
2,718,442	-				-2.7
2,718,513	+				+0.1
2,718,517	+				+0.1
2,718,517	+				-0.9
2,718,517	+				+0.2
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2,718,992	-		IAI47_12875	0.64	+0.3