Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3752

Experiment: Nalidixic 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3751 and Ga0059261_3752 are separated by 190 nucleotidesGa0059261_3752 and Ga0059261_3753 are separated by 154 nucleotides Ga0059261_3751: Ga0059261_3751 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 3,852,716 to 3,854,272 _3751 Ga0059261_3752: Ga0059261_3752 - Uncharacterized protein conserved in bacteria, at 3,854,463 to 3,854,906 _3752 Ga0059261_3753: Ga0059261_3753 - Diaminopimelate decarboxylase, at 3,855,061 to 3,856,269 _3753 Position (kb) 3854 3855Strain fitness (log2 ratio) -2 -1 0 1at 3853.733 kb on + strand, within Ga0059261_3751at 3853.734 kb on - strand, within Ga0059261_3751at 3854.183 kb on + strandat 3854.282 kb on + strandat 3854.282 kb on + strandat 3854.282 kb on + strandat 3854.282 kb on + strandat 3854.282 kb on + strandat 3854.282 kb on + strandat 3854.282 kb on + strandat 3854.282 kb on + strandat 3854.282 kb on + strandat 3854.283 kb on - strandat 3854.283 kb on - strandat 3854.283 kb on - strandat 3854.283 kb on - strandat 3854.283 kb on - strandat 3854.283 kb on - strandat 3854.283 kb on - strandat 3854.283 kb on - strandat 3854.283 kb on - strandat 3854.283 kb on - strandat 3854.283 kb on - strandat 3854.306 kb on + strandat 3854.306 kb on + strandat 3854.319 kb on + strandat 3854.411 kb on - strandat 3854.411 kb on - strandat 3854.411 kb on - strandat 3854.411 kb on - strandat 3854.411 kb on - strandat 3854.806 kb on + strand, within Ga0059261_3752at 3854.806 kb on + strand, within Ga0059261_3752at 3854.806 kb on + strand, within Ga0059261_3752at 3854.806 kb on + strand, within Ga0059261_3752at 3854.806 kb on + strand, within Ga0059261_3752at 3854.952 kb on + strandat 3854.952 kb on + strandat 3854.952 kb on + strandat 3854.953 kb on - strandat 3854.953 kb on - strandat 3854.954 kb on + strandat 3854.954 kb on + strandat 3854.955 kb on - strandat 3854.955 kb on - strandat 3854.955 kb on - strandat 3854.955 kb on - strandat 3854.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.05 mg/ml
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3,853,733 + Ga0059261_3751 0.65 -0.4
3,853,734 - Ga0059261_3751 0.65 -1.4
3,854,183 + -0.1
3,854,282 + +0.0
3,854,282 + -0.3
3,854,282 + +0.8
3,854,282 + -2.1
3,854,282 + -1.8
3,854,282 + -1.0
3,854,282 + +1.2
3,854,282 + +0.0
3,854,282 + +0.8
3,854,283 - +0.8
3,854,283 - -0.8
3,854,283 - +0.8
3,854,283 - +0.1
3,854,283 - -0.3
3,854,283 - -1.0
3,854,283 - -0.6
3,854,283 - -1.1
3,854,283 - +0.1
3,854,283 - +1.3
3,854,283 - +0.8
3,854,306 + -0.2
3,854,306 + -0.9
3,854,319 + +0.4
3,854,411 - -0.0
3,854,411 - +0.1
3,854,411 - +0.5
3,854,411 - +0.5
3,854,411 - -0.2
3,854,806 + Ga0059261_3752 0.77 -0.8
3,854,806 + Ga0059261_3752 0.77 -1.2
3,854,806 + Ga0059261_3752 0.77 -1.3
3,854,806 + Ga0059261_3752 0.77 +0.4
3,854,806 + Ga0059261_3752 0.77 -0.8
3,854,952 + -0.5
3,854,952 + +0.5
3,854,952 + +1.6
3,854,953 - -0.0
3,854,953 - -0.1
3,854,954 + -0.1
3,854,954 + -0.0
3,854,955 - +0.1
3,854,955 - +0.3
3,854,955 - -0.3
3,854,955 - +0.1
3,854,984 - +0.8

Or see this region's nucleotide sequence