Experiment: Nalidixic 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3751 and Ga0059261_3752 are separated by 190 nucleotides Ga0059261_3752 and Ga0059261_3753 are separated by 154 nucleotides
Ga0059261_3751: Ga0059261_3751 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 3,852,716 to 3,854,272
_3751
Ga0059261_3752: Ga0059261_3752 - Uncharacterized protein conserved in bacteria, at 3,854,463 to 3,854,906
_3752
Ga0059261_3753: Ga0059261_3753 - Diaminopimelate decarboxylase, at 3,855,061 to 3,856,269
_3753
Position (kb)
3854
3855 Strain fitness (log2 ratio)
-2
-1
0
1 at 3853.733 kb on + strand, within Ga0059261_3751 at 3853.734 kb on - strand, within Ga0059261_3751 at 3854.183 kb on + strand at 3854.282 kb on + strand at 3854.282 kb on + strand at 3854.282 kb on + strand at 3854.282 kb on + strand at 3854.282 kb on + strand at 3854.282 kb on + strand at 3854.282 kb on + strand at 3854.282 kb on + strand at 3854.282 kb on + strand at 3854.283 kb on - strand at 3854.283 kb on - strand at 3854.283 kb on - strand at 3854.283 kb on - strand at 3854.283 kb on - strand at 3854.283 kb on - strand at 3854.283 kb on - strand at 3854.283 kb on - strand at 3854.283 kb on - strand at 3854.283 kb on - strand at 3854.283 kb on - strand at 3854.306 kb on + strand at 3854.306 kb on + strand at 3854.319 kb on + strand at 3854.411 kb on - strand at 3854.411 kb on - strand at 3854.411 kb on - strand at 3854.411 kb on - strand at 3854.411 kb on - strand at 3854.806 kb on + strand, within Ga0059261_3752 at 3854.806 kb on + strand, within Ga0059261_3752 at 3854.806 kb on + strand, within Ga0059261_3752 at 3854.806 kb on + strand, within Ga0059261_3752 at 3854.806 kb on + strand, within Ga0059261_3752 at 3854.952 kb on + strand at 3854.952 kb on + strand at 3854.952 kb on + strand at 3854.953 kb on - strand at 3854.953 kb on - strand at 3854.954 kb on + strand at 3854.954 kb on + strand at 3854.955 kb on - strand at 3854.955 kb on - strand at 3854.955 kb on - strand at 3854.955 kb on - strand at 3854.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.05 mg/ml remove 3,853,733 + Ga0059261_3751 0.65 -0.4 3,853,734 - Ga0059261_3751 0.65 -1.4 3,854,183 + -0.1 3,854,282 + +0.0 3,854,282 + -0.3 3,854,282 + +0.8 3,854,282 + -2.1 3,854,282 + -1.8 3,854,282 + -1.0 3,854,282 + +1.2 3,854,282 + +0.0 3,854,282 + +0.8 3,854,283 - +0.8 3,854,283 - -0.8 3,854,283 - +0.8 3,854,283 - +0.1 3,854,283 - -0.3 3,854,283 - -1.0 3,854,283 - -0.6 3,854,283 - -1.1 3,854,283 - +0.1 3,854,283 - +1.3 3,854,283 - +0.8 3,854,306 + -0.2 3,854,306 + -0.9 3,854,319 + +0.4 3,854,411 - -0.0 3,854,411 - +0.1 3,854,411 - +0.5 3,854,411 - +0.5 3,854,411 - -0.2 3,854,806 + Ga0059261_3752 0.77 -0.8 3,854,806 + Ga0059261_3752 0.77 -1.2 3,854,806 + Ga0059261_3752 0.77 -1.3 3,854,806 + Ga0059261_3752 0.77 +0.4 3,854,806 + Ga0059261_3752 0.77 -0.8 3,854,952 + -0.5 3,854,952 + +0.5 3,854,952 + +1.6 3,854,953 - -0.0 3,854,953 - -0.1 3,854,954 + -0.1 3,854,954 + -0.0 3,854,955 - +0.1 3,854,955 - +0.3 3,854,955 - -0.3 3,854,955 - +0.1 3,854,984 - +0.8
Or see this region's nucleotide sequence