Experiment: Nalidixic 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1963 and Ga0059261_1964 are separated by 343 nucleotides Ga0059261_1964 and Ga0059261_1965 are separated by 114 nucleotides
Ga0059261_1963: Ga0059261_1963 - Isocitrate lyase, at 2,068,968 to 2,070,563
_1963
Ga0059261_1964: Ga0059261_1964 - DNA modification methylase, at 2,070,907 to 2,072,055
_1964
Ga0059261_1965: Ga0059261_1965 - dihydropteroate synthase, at 2,072,170 to 2,073,258
_1965
Position (kb)
2070
2071
2072
2073 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2069.980 kb on + strand, within Ga0059261_1963 at 2069.980 kb on + strand, within Ga0059261_1963 at 2069.980 kb on + strand, within Ga0059261_1963 at 2069.980 kb on + strand, within Ga0059261_1963 at 2069.980 kb on + strand, within Ga0059261_1963 at 2069.980 kb on + strand, within Ga0059261_1963 at 2069.980 kb on + strand, within Ga0059261_1963 at 2069.980 kb on + strand, within Ga0059261_1963 at 2069.981 kb on - strand, within Ga0059261_1963 at 2069.981 kb on - strand, within Ga0059261_1963 at 2069.981 kb on - strand, within Ga0059261_1963 at 2069.981 kb on - strand, within Ga0059261_1963 at 2069.981 kb on - strand, within Ga0059261_1963 at 2069.981 kb on - strand, within Ga0059261_1963 at 2069.981 kb on - strand, within Ga0059261_1963 at 2069.981 kb on - strand, within Ga0059261_1963 at 2069.981 kb on - strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.166 kb on + strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.167 kb on - strand, within Ga0059261_1963 at 2070.236 kb on - strand, within Ga0059261_1963 at 2070.271 kb on + strand, within Ga0059261_1963 at 2070.271 kb on + strand at 2070.271 kb on + strand, within Ga0059261_1963 at 2070.271 kb on + strand, within Ga0059261_1963 at 2070.271 kb on + strand, within Ga0059261_1963 at 2070.271 kb on + strand, within Ga0059261_1963 at 2070.272 kb on - strand, within Ga0059261_1963 at 2070.272 kb on - strand, within Ga0059261_1963 at 2070.272 kb on - strand, within Ga0059261_1963 at 2070.272 kb on - strand, within Ga0059261_1963 at 2070.272 kb on - strand, within Ga0059261_1963 at 2070.272 kb on - strand, within Ga0059261_1963 at 2070.272 kb on - strand, within Ga0059261_1963 at 2070.272 kb on - strand, within Ga0059261_1963 at 2070.272 kb on - strand, within Ga0059261_1963 at 2070.272 kb on - strand, within Ga0059261_1963 at 2070.277 kb on + strand, within Ga0059261_1963 at 2070.278 kb on - strand, within Ga0059261_1963 at 2070.278 kb on - strand, within Ga0059261_1963 at 2070.278 kb on - strand, within Ga0059261_1963 at 2070.278 kb on - strand, within Ga0059261_1963 at 2070.367 kb on + strand, within Ga0059261_1963 at 2070.367 kb on + strand, within Ga0059261_1963 at 2070.367 kb on + strand, within Ga0059261_1963 at 2070.368 kb on - strand, within Ga0059261_1963 at 2070.368 kb on - strand, within Ga0059261_1963 at 2070.388 kb on + strand, within Ga0059261_1963 at 2070.388 kb on + strand, within Ga0059261_1963 at 2070.388 kb on + strand, within Ga0059261_1963 at 2070.388 kb on + strand, within Ga0059261_1963 at 2070.388 kb on + strand, within Ga0059261_1963 at 2070.389 kb on - strand, within Ga0059261_1963 at 2070.389 kb on - strand, within Ga0059261_1963 at 2070.389 kb on - strand, within Ga0059261_1963 at 2070.389 kb on - strand, within Ga0059261_1963 at 2070.389 kb on - strand, within Ga0059261_1963 at 2070.389 kb on - strand, within Ga0059261_1963 at 2070.389 kb on - strand, within Ga0059261_1963 at 2070.389 kb on - strand, within Ga0059261_1963 at 2070.389 kb on - strand, within Ga0059261_1963 at 2070.424 kb on + strand at 2070.424 kb on + strand at 2070.425 kb on - strand at 2070.425 kb on - strand at 2070.425 kb on - strand at 2070.425 kb on - strand at 2070.425 kb on - strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.556 kb on + strand at 2070.557 kb on - strand at 2070.557 kb on - strand at 2070.557 kb on - strand at 2070.557 kb on - strand at 2070.557 kb on - strand at 2070.674 kb on - strand at 2070.748 kb on + strand at 2070.748 kb on + strand at 2070.761 kb on + strand at 2070.762 kb on - strand at 2070.762 kb on - strand at 2070.762 kb on - strand at 2070.838 kb on + strand at 2070.838 kb on + strand at 2070.894 kb on + strand at 2072.032 kb on + strand at 2072.032 kb on + strand at 2072.032 kb on + strand at 2072.032 kb on + strand at 2072.033 kb on - strand at 2072.033 kb on - strand at 2072.033 kb on - strand at 2072.033 kb on - strand at 2072.033 kb on - strand at 2072.033 kb on - strand at 2072.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.05 mg/ml remove 2,069,980 + Ga0059261_1963 0.63 -0.2 2,069,980 + Ga0059261_1963 0.63 -0.1 2,069,980 + Ga0059261_1963 0.63 -0.2 2,069,980 + Ga0059261_1963 0.63 +1.2 2,069,980 + Ga0059261_1963 0.63 -0.7 2,069,980 + Ga0059261_1963 0.63 +0.1 2,069,980 + Ga0059261_1963 0.63 +0.5 2,069,980 + Ga0059261_1963 0.63 -0.1 2,069,981 - Ga0059261_1963 0.63 +0.2 2,069,981 - Ga0059261_1963 0.63 -0.6 2,069,981 - Ga0059261_1963 0.63 +0.4 2,069,981 - Ga0059261_1963 0.63 +0.1 2,069,981 - Ga0059261_1963 0.63 -1.3 2,069,981 - Ga0059261_1963 0.63 -0.5 2,069,981 - Ga0059261_1963 0.63 +0.3 2,069,981 - Ga0059261_1963 0.63 +0.3 2,069,981 - Ga0059261_1963 0.63 -0.3 2,070,166 + Ga0059261_1963 0.75 +0.0 2,070,166 + Ga0059261_1963 0.75 -0.5 2,070,166 + Ga0059261_1963 0.75 +0.7 2,070,166 + Ga0059261_1963 0.75 -0.3 2,070,166 + Ga0059261_1963 0.75 +0.4 2,070,166 + Ga0059261_1963 0.75 +0.2 2,070,166 + Ga0059261_1963 0.75 +0.5 2,070,166 + Ga0059261_1963 0.75 +0.5 2,070,166 + Ga0059261_1963 0.75 +2.5 2,070,166 + Ga0059261_1963 0.75 +0.0 2,070,166 + Ga0059261_1963 0.75 -0.8 2,070,166 + Ga0059261_1963 0.75 -1.1 2,070,167 - Ga0059261_1963 0.75 +0.8 2,070,167 - Ga0059261_1963 0.75 +1.0 2,070,167 - Ga0059261_1963 0.75 +0.2 2,070,167 - Ga0059261_1963 0.75 +0.0 2,070,167 - Ga0059261_1963 0.75 -0.2 2,070,167 - Ga0059261_1963 0.75 -0.7 2,070,167 - Ga0059261_1963 0.75 +0.6 2,070,167 - Ga0059261_1963 0.75 +0.6 2,070,167 - Ga0059261_1963 0.75 -0.4 2,070,167 - Ga0059261_1963 0.75 +1.2 2,070,167 - Ga0059261_1963 0.75 -0.4 2,070,167 - Ga0059261_1963 0.75 -0.6 2,070,236 - Ga0059261_1963 0.79 +0.6 2,070,271 + Ga0059261_1963 0.82 +0.3 2,070,271 + +1.5 2,070,271 + Ga0059261_1963 0.82 -0.1 2,070,271 + Ga0059261_1963 0.82 -0.3 2,070,271 + Ga0059261_1963 0.82 +0.1 2,070,271 + Ga0059261_1963 0.82 -0.2 2,070,272 - Ga0059261_1963 0.82 +1.2 2,070,272 - Ga0059261_1963 0.82 -0.9 2,070,272 - Ga0059261_1963 0.82 -2.1 2,070,272 - Ga0059261_1963 0.82 +0.2 2,070,272 - Ga0059261_1963 0.82 +0.0 2,070,272 - Ga0059261_1963 0.82 -0.3 2,070,272 - Ga0059261_1963 0.82 -0.6 2,070,272 - Ga0059261_1963 0.82 -1.2 2,070,272 - Ga0059261_1963 0.82 -0.8 2,070,272 - Ga0059261_1963 0.82 +1.2 2,070,277 + Ga0059261_1963 0.82 +1.1 2,070,278 - Ga0059261_1963 0.82 -0.1 2,070,278 - Ga0059261_1963 0.82 +0.8 2,070,278 - Ga0059261_1963 0.82 +0.9 2,070,278 - Ga0059261_1963 0.82 +0.3 2,070,367 + Ga0059261_1963 0.88 +0.0 2,070,367 + Ga0059261_1963 0.88 +1.3 2,070,367 + Ga0059261_1963 0.88 +0.9 2,070,368 - Ga0059261_1963 0.88 +0.4 2,070,368 - Ga0059261_1963 0.88 +0.6 2,070,388 + Ga0059261_1963 0.89 +0.1 2,070,388 + Ga0059261_1963 0.89 -0.1 2,070,388 + Ga0059261_1963 0.89 -0.0 2,070,388 + Ga0059261_1963 0.89 -1.0 2,070,388 + Ga0059261_1963 0.89 -0.1 2,070,389 - Ga0059261_1963 0.89 +0.1 2,070,389 - Ga0059261_1963 0.89 +1.2 2,070,389 - Ga0059261_1963 0.89 +0.1 2,070,389 - Ga0059261_1963 0.89 +1.2 2,070,389 - Ga0059261_1963 0.89 -0.0 2,070,389 - Ga0059261_1963 0.89 +0.7 2,070,389 - Ga0059261_1963 0.89 +0.0 2,070,389 - Ga0059261_1963 0.89 -0.3 2,070,389 - Ga0059261_1963 0.89 +0.4 2,070,424 + -0.3 2,070,424 + +0.0 2,070,425 - +0.0 2,070,425 - -0.3 2,070,425 - -0.6 2,070,425 - -0.2 2,070,425 - +0.8 2,070,556 + -0.4 2,070,556 + -0.3 2,070,556 + +0.0 2,070,556 + +0.0 2,070,556 + -0.1 2,070,556 + +0.3 2,070,556 + -0.1 2,070,556 + +0.0 2,070,556 + -0.2 2,070,556 + -0.3 2,070,556 + -1.1 2,070,556 + +0.9 2,070,557 - +0.2 2,070,557 - +0.4 2,070,557 - -0.4 2,070,557 - -0.3 2,070,557 - +0.7 2,070,674 - -0.1 2,070,748 + -0.7 2,070,748 + -0.1 2,070,761 + +0.3 2,070,762 - +0.9 2,070,762 - -0.7 2,070,762 - +0.1 2,070,838 + -1.3 2,070,838 + +0.5 2,070,894 + -0.1 2,072,032 + +1.9 2,072,032 + +0.1 2,072,032 + -0.5 2,072,032 + -1.7 2,072,033 - +0.7 2,072,033 - -0.4 2,072,033 - +1.7 2,072,033 - -0.1 2,072,033 - -0.7 2,072,033 - +0.1 2,072,033 - +0.3
Or see this region's nucleotide sequence