Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0926

Experiment: Nalidixic 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0925 and Ga0059261_0926 are separated by 142 nucleotidesGa0059261_0926 and Ga0059261_0927 are separated by 94 nucleotidesGa0059261_0927 and Ga0059261_0928 are separated by 64 nucleotidesGa0059261_0928 and Ga0059261_0929 are separated by 131 nucleotides Ga0059261_0925: Ga0059261_0925 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 958,357 to 959,292 _0925 Ga0059261_0926: Ga0059261_0926 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 959,435 to 960,019 _0926 Ga0059261_0927: Ga0059261_0927 - Domain of unknown function (DUF333), at 960,114 to 960,347 _0927 Ga0059261_0928: Ga0059261_0928 - Glyoxalase-like domain, at 960,412 to 960,789 _0928 Ga0059261_0929: Ga0059261_0929 - anthranilate phosphoribosyltransferase, at 960,921 to 961,916 _0929 Position (kb) 959 960 961Strain fitness (log2 ratio) -2 -1 0 1 2at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.658 kb on - strand, within Ga0059261_0925at 958.658 kb on - strand, within Ga0059261_0925at 958.915 kb on + strand, within Ga0059261_0925at 958.915 kb on + strand, within Ga0059261_0925at 958.915 kb on + strand, within Ga0059261_0925at 958.915 kb on + strand, within Ga0059261_0925at 958.915 kb on + strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 959.136 kb on - strand, within Ga0059261_0925at 959.287 kb on + strandat 959.287 kb on + strandat 959.299 kb on + strandat 959.299 kb on + strandat 959.299 kb on + strandat 959.300 kb on - strandat 959.356 kb on + strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.361 kb on + strandat 959.361 kb on + strandat 959.362 kb on - strandat 959.362 kb on - strandat 959.362 kb on - strandat 959.456 kb on + strandat 959.456 kb on + strandat 959.456 kb on + strandat 959.456 kb on + strandat 959.457 kb on - strandat 959.486 kb on + strandat 959.486 kb on + strandat 959.486 kb on + strandat 959.486 kb on + strandat 959.487 kb on - strandat 959.487 kb on - strandat 959.487 kb on - strandat 959.813 kb on + strand, within Ga0059261_0926at 959.813 kb on + strand, within Ga0059261_0926at 959.813 kb on + strand, within Ga0059261_0926at 959.814 kb on - strand, within Ga0059261_0926at 959.814 kb on - strand, within Ga0059261_0926at 959.814 kb on - strand, within Ga0059261_0926at 959.986 kb on + strandat 959.986 kb on + strandat 960.039 kb on - strandat 960.039 kb on - strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.123 kb on - strandat 960.123 kb on - strandat 960.351 kb on + strandat 960.351 kb on + strandat 960.351 kb on + strandat 960.352 kb on - strandat 960.524 kb on + strand, within Ga0059261_0928at 960.524 kb on + strand, within Ga0059261_0928at 960.525 kb on - strand, within Ga0059261_0928at 960.525 kb on - strand, within Ga0059261_0928at 960.525 kb on - strand, within Ga0059261_0928at 960.525 kb on - strand, within Ga0059261_0928at 960.525 kb on - strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.719 kb on + strand, within Ga0059261_0928at 960.720 kb on - strand, within Ga0059261_0928at 960.720 kb on - strand, within Ga0059261_0928at 960.720 kb on - strand, within Ga0059261_0928at 960.720 kb on - strand, within Ga0059261_0928at 960.752 kb on + strandat 960.752 kb on + strandat 960.753 kb on - strandat 960.753 kb on - strandat 960.753 kb on - strandat 960.753 kb on - strandat 960.753 kb on - strandat 960.753 kb on - strandat 960.822 kb on - strandat 960.911 kb on + strandat 960.911 kb on + strandat 960.911 kb on + strandat 960.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.05 mg/ml
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958,561 + Ga0059261_0925 0.22 +0.7
958,561 + Ga0059261_0925 0.22 -0.6
958,561 + Ga0059261_0925 0.22 +0.2
958,561 + Ga0059261_0925 0.22 +0.8
958,561 + Ga0059261_0925 0.22 -0.7
958,561 + Ga0059261_0925 0.22 +0.9
958,561 + Ga0059261_0925 0.22 -0.2
958,561 + Ga0059261_0925 0.22 -0.6
958,561 + Ga0059261_0925 0.22 -0.2
958,561 + Ga0059261_0925 0.22 -0.3
958,561 + Ga0059261_0925 0.22 +0.3
958,561 + Ga0059261_0925 0.22 -0.6
958,561 + Ga0059261_0925 0.22 -0.6
958,562 - Ga0059261_0925 0.22 -0.5
958,562 - Ga0059261_0925 0.22 +1.5
958,562 - Ga0059261_0925 0.22 -0.7
958,562 - Ga0059261_0925 0.22 +0.4
958,562 - Ga0059261_0925 0.22 -0.1
958,562 - Ga0059261_0925 0.22 -1.0
958,658 - Ga0059261_0925 0.32 -0.4
958,658 - Ga0059261_0925 0.32 +0.8
958,915 + Ga0059261_0925 0.60 -0.1
958,915 + Ga0059261_0925 0.60 -0.5
958,915 + Ga0059261_0925 0.60 +1.8
958,915 + Ga0059261_0925 0.60 +0.1
958,915 + Ga0059261_0925 0.60 +0.4
958,916 - Ga0059261_0925 0.60 +0.2
958,916 - Ga0059261_0925 0.60 -0.1
958,916 - Ga0059261_0925 0.60 -0.4
958,916 - Ga0059261_0925 0.60 -1.2
958,916 - Ga0059261_0925 0.60 -1.0
958,916 - Ga0059261_0925 0.60 +0.1
958,916 - Ga0059261_0925 0.60 +0.8
958,916 - Ga0059261_0925 0.60 -0.5
959,136 - Ga0059261_0925 0.83 +0.2
959,287 + +0.2
959,287 + +0.1
959,299 + -0.3
959,299 + -1.7
959,299 + +0.2
959,300 - -1.2
959,356 + -0.3
959,357 - -1.4
959,357 - -1.6
959,357 - -0.0
959,357 - -1.3
959,357 - +0.1
959,357 - +0.3
959,361 + -0.3
959,361 + +0.3
959,362 - -0.1
959,362 - -0.3
959,362 - +0.2
959,456 + +1.1
959,456 + -0.2
959,456 + +0.3
959,456 + -0.6
959,457 - -1.0
959,486 + -0.5
959,486 + -0.3
959,486 + +1.6
959,486 + -0.6
959,487 - -0.0
959,487 - +0.4
959,487 - -0.3
959,813 + Ga0059261_0926 0.65 +0.2
959,813 + Ga0059261_0926 0.65 -0.5
959,813 + Ga0059261_0926 0.65 +0.5
959,814 - Ga0059261_0926 0.65 +0.5
959,814 - Ga0059261_0926 0.65 +0.4
959,814 - Ga0059261_0926 0.65 +0.6
959,986 + +0.0
959,986 + +0.0
960,039 - -1.0
960,039 - +0.0
960,063 + -0.2
960,063 + +0.2
960,063 + -0.6
960,063 + -0.5
960,063 + -0.4
960,063 + -0.2
960,063 + -0.2
960,063 + +0.4
960,064 - +1.4
960,064 - -0.1
960,064 - -0.5
960,064 - +0.6
960,064 - -0.3
960,123 - +0.8
960,123 - +1.4
960,351 + +0.0
960,351 + -0.4
960,351 + +1.8
960,352 - +0.3
960,524 + Ga0059261_0928 0.30 -0.6
960,524 + Ga0059261_0928 0.30 +0.3
960,525 - Ga0059261_0928 0.30 -0.4
960,525 - Ga0059261_0928 0.30 -0.7
960,525 - Ga0059261_0928 0.30 -0.5
960,525 - Ga0059261_0928 0.30 +0.5
960,525 - Ga0059261_0928 0.30 +0.0
960,719 + Ga0059261_0928 0.81 +0.2
960,719 + Ga0059261_0928 0.81 +0.5
960,719 + Ga0059261_0928 0.81 -0.1
960,719 + Ga0059261_0928 0.81 -0.3
960,719 + Ga0059261_0928 0.81 -2.0
960,719 + Ga0059261_0928 0.81 +0.3
960,719 + Ga0059261_0928 0.81 +1.0
960,720 - Ga0059261_0928 0.81 +0.1
960,720 - Ga0059261_0928 0.81 -1.3
960,720 - Ga0059261_0928 0.81 -0.2
960,720 - Ga0059261_0928 0.81 +1.4
960,752 + -0.7
960,752 + -0.6
960,753 - -1.2
960,753 - +0.0
960,753 - -0.5
960,753 - -0.4
960,753 - -0.2
960,753 - +0.8
960,822 - -0.3
960,911 + +0.7
960,911 + -0.7
960,911 + +1.2
960,912 - -0.2

Or see this region's nucleotide sequence