Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0549

Experiment: Nalidixic 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0547 and Ga0059261_0548 overlap by 4 nucleotidesGa0059261_0548 and Ga0059261_0549 overlap by 4 nucleotidesGa0059261_0549 and Ga0059261_0550 overlap by 4 nucleotidesGa0059261_0550 and Ga0059261_0551 overlap by 1 nucleotides Ga0059261_0547: Ga0059261_0547 - Sugar phosphate isomerases/epimerases, at 562,445 to 563,275 _0547 Ga0059261_0548: Ga0059261_0548 - Gluconate 2-dehydrogenase subunit 3, at 563,272 to 563,841 _0548 Ga0059261_0549: Ga0059261_0549 - Domain of Unknown Function (DUF1080), at 563,838 to 564,653 _0549 Ga0059261_0550: Ga0059261_0550 - Hydroxypyruvate isomerase, at 564,650 to 565,573 _0550 Ga0059261_0551: Ga0059261_0551 - Cytochrome c2, at 565,573 to 565,956 _0551 Position (kb) 563 564 565Strain fitness (log2 ratio) -1 0 1 2at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.996 kb on - strand, within Ga0059261_0547at 563.073 kb on + strand, within Ga0059261_0547at 563.074 kb on - strand, within Ga0059261_0547at 563.074 kb on - strand, within Ga0059261_0547at 563.074 kb on - strand, within Ga0059261_0547at 563.169 kb on + strand, within Ga0059261_0547at 563.169 kb on + strand, within Ga0059261_0547at 563.169 kb on + strand, within Ga0059261_0547at 563.169 kb on + strand, within Ga0059261_0547at 563.169 kb on + strand, within Ga0059261_0547at 563.170 kb on - strand, within Ga0059261_0547at 563.282 kb on + strandat 563.282 kb on + strandat 563.282 kb on + strandat 563.283 kb on - strandat 563.283 kb on - strandat 563.283 kb on - strandat 563.283 kb on - strandat 563.283 kb on - strandat 563.319 kb on + strandat 563.321 kb on + strandat 563.321 kb on + strandat 563.321 kb on + strandat 563.321 kb on + strandat 563.342 kb on + strand, within Ga0059261_0548at 563.342 kb on + strand, within Ga0059261_0548at 563.342 kb on + strand, within Ga0059261_0548at 563.343 kb on - strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.381 kb on + strand, within Ga0059261_0548at 563.381 kb on + strand, within Ga0059261_0548at 563.637 kb on + strand, within Ga0059261_0548at 563.638 kb on - strand, within Ga0059261_0548at 563.783 kb on + strand, within Ga0059261_0548at 563.783 kb on + strand, within Ga0059261_0548at 563.784 kb on - strand, within Ga0059261_0548at 563.892 kb on + strandat 563.969 kb on - strand, within Ga0059261_0549at 564.052 kb on + strand, within Ga0059261_0549at 564.052 kb on + strand, within Ga0059261_0549at 564.052 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.103 kb on - strand, within Ga0059261_0549at 564.103 kb on - strand, within Ga0059261_0549at 564.103 kb on - strand, within Ga0059261_0549at 564.112 kb on + strand, within Ga0059261_0549at 564.112 kb on + strand, within Ga0059261_0549at 564.113 kb on - strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.235 kb on + strand, within Ga0059261_0549at 564.235 kb on + strand, within Ga0059261_0549at 564.260 kb on + strand, within Ga0059261_0549at 564.260 kb on + strand, within Ga0059261_0549at 564.684 kb on + strandat 564.685 kb on - strandat 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.853 kb on - strand, within Ga0059261_0550at 564.853 kb on - strand, within Ga0059261_0550at 564.919 kb on - strand, within Ga0059261_0550at 564.972 kb on + strand, within Ga0059261_0550at 564.972 kb on + strand, within Ga0059261_0550at 564.972 kb on + strand, within Ga0059261_0550at 564.973 kb on - strand, within Ga0059261_0550at 564.973 kb on - strand, within Ga0059261_0550at 564.973 kb on - strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.996 kb on + strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.997 kb on - strand, within Ga0059261_0550at 564.998 kb on + strandat 564.999 kb on - strand, within Ga0059261_0550at 564.999 kb on - strand, within Ga0059261_0550at 565.112 kb on - strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.462 kb on - strand, within Ga0059261_0550at 565.462 kb on - strand, within Ga0059261_0550at 565.598 kb on + strandat 565.598 kb on + strandat 565.598 kb on + strandat 565.598 kb on + strandat 565.599 kb on - strandat 565.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.05 mg/ml
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562,917 + Ga0059261_0547 0.57 +0.3
562,917 + Ga0059261_0547 0.57 +1.1
562,917 + Ga0059261_0547 0.57 +0.1
562,917 + Ga0059261_0547 0.57 +1.2
562,917 + Ga0059261_0547 0.57 -0.4
562,917 + Ga0059261_0547 0.57 +0.9
562,917 + Ga0059261_0547 0.57 -0.5
562,917 + Ga0059261_0547 0.57 -0.4
562,918 - Ga0059261_0547 0.57 +0.6
562,918 - Ga0059261_0547 0.57 +0.8
562,918 - Ga0059261_0547 0.57 -0.1
562,918 - Ga0059261_0547 0.57 +0.0
562,918 - Ga0059261_0547 0.57 +0.5
562,918 - Ga0059261_0547 0.57 +1.3
562,996 - Ga0059261_0547 0.66 +0.8
563,073 + Ga0059261_0547 0.76 -0.1
563,074 - Ga0059261_0547 0.76 +0.9
563,074 - Ga0059261_0547 0.76 +0.1
563,074 - Ga0059261_0547 0.76 +0.2
563,169 + Ga0059261_0547 0.87 +0.2
563,169 + Ga0059261_0547 0.87 -1.2
563,169 + Ga0059261_0547 0.87 -0.1
563,169 + Ga0059261_0547 0.87 -0.0
563,169 + Ga0059261_0547 0.87 -1.0
563,170 - Ga0059261_0547 0.87 -0.0
563,282 + -0.7
563,282 + -0.7
563,282 + -0.2
563,283 - +0.2
563,283 - -0.6
563,283 - -0.3
563,283 - +0.2
563,283 - +1.1
563,319 + +0.4
563,321 + -0.2
563,321 + +0.3
563,321 + -0.1
563,321 + +0.5
563,342 + Ga0059261_0548 0.12 -0.5
563,342 + Ga0059261_0548 0.12 +0.7
563,342 + Ga0059261_0548 0.12 -0.4
563,343 - Ga0059261_0548 0.12 +0.2
563,378 + Ga0059261_0548 0.19 -0.7
563,378 + Ga0059261_0548 0.19 +0.9
563,378 + Ga0059261_0548 0.19 -1.3
563,378 + Ga0059261_0548 0.19 -0.2
563,378 + Ga0059261_0548 0.19 -0.0
563,378 + Ga0059261_0548 0.19 -1.1
563,379 - Ga0059261_0548 0.19 -0.4
563,379 - Ga0059261_0548 0.19 +0.9
563,379 - Ga0059261_0548 0.19 +1.1
563,379 - Ga0059261_0548 0.19 -1.7
563,379 - Ga0059261_0548 0.19 -0.3
563,379 - Ga0059261_0548 0.19 -0.1
563,379 - Ga0059261_0548 0.19 +0.1
563,379 - Ga0059261_0548 0.19 -0.4
563,379 - Ga0059261_0548 0.19 +0.5
563,379 - Ga0059261_0548 0.19 +0.2
563,379 - Ga0059261_0548 0.19 -0.5
563,381 + Ga0059261_0548 0.19 +0.4
563,381 + Ga0059261_0548 0.19 -0.9
563,637 + Ga0059261_0548 0.64 +0.2
563,638 - Ga0059261_0548 0.64 -0.1
563,783 + Ga0059261_0548 0.90 -0.4
563,783 + Ga0059261_0548 0.90 +0.3
563,784 - Ga0059261_0548 0.90 +0.0
563,892 + -0.1
563,969 - Ga0059261_0549 0.16 +1.9
564,052 + Ga0059261_0549 0.26 -0.5
564,052 + Ga0059261_0549 0.26 +0.5
564,052 + Ga0059261_0549 0.26 +0.0
564,102 + Ga0059261_0549 0.32 +0.7
564,102 + Ga0059261_0549 0.32 +0.6
564,102 + Ga0059261_0549 0.32 -0.1
564,102 + Ga0059261_0549 0.32 -0.3
564,103 - Ga0059261_0549 0.32 +0.3
564,103 - Ga0059261_0549 0.32 +0.1
564,103 - Ga0059261_0549 0.32 +0.4
564,112 + Ga0059261_0549 0.34 +1.5
564,112 + Ga0059261_0549 0.34 -0.2
564,113 - Ga0059261_0549 0.34 -0.1
564,196 + Ga0059261_0549 0.44 +0.5
564,196 + Ga0059261_0549 0.44 +0.1
564,196 + Ga0059261_0549 0.44 +0.1
564,196 + Ga0059261_0549 0.44 -0.1
564,196 + Ga0059261_0549 0.44 +0.2
564,196 + Ga0059261_0549 0.44 -0.7
564,197 - Ga0059261_0549 0.44 +0.3
564,197 - Ga0059261_0549 0.44 +0.6
564,197 - Ga0059261_0549 0.44 +0.7
564,197 - Ga0059261_0549 0.44 +0.6
564,197 - Ga0059261_0549 0.44 +0.6
564,197 - Ga0059261_0549 0.44 -0.2
564,235 + Ga0059261_0549 0.49 +0.0
564,235 + Ga0059261_0549 0.49 -0.7
564,260 + Ga0059261_0549 0.52 -0.1
564,260 + Ga0059261_0549 0.52 +0.5
564,684 + +2.3
564,685 - +0.7
564,759 + Ga0059261_0550 0.12 +2.4
564,759 + Ga0059261_0550 0.12 -0.7
564,759 + Ga0059261_0550 0.12 +1.7
564,759 + Ga0059261_0550 0.12 -0.3
564,760 - Ga0059261_0550 0.12 -0.9
564,760 - Ga0059261_0550 0.12 +0.4
564,760 - Ga0059261_0550 0.12 -0.3
564,760 - Ga0059261_0550 0.12 +0.4
564,795 + Ga0059261_0550 0.16 +0.2
564,795 + Ga0059261_0550 0.16 -0.7
564,795 + Ga0059261_0550 0.16 -0.3
564,795 + Ga0059261_0550 0.16 +0.2
564,796 - Ga0059261_0550 0.16 -0.5
564,796 - Ga0059261_0550 0.16 +0.1
564,796 - Ga0059261_0550 0.16 +0.8
564,796 - Ga0059261_0550 0.16 -0.1
564,796 - Ga0059261_0550 0.16 -0.5
564,796 - Ga0059261_0550 0.16 +0.9
564,796 - Ga0059261_0550 0.16 +0.6
564,853 - Ga0059261_0550 0.22 -1.1
564,853 - Ga0059261_0550 0.22 -0.1
564,919 - Ga0059261_0550 0.29 +0.0
564,972 + Ga0059261_0550 0.35 +0.2
564,972 + Ga0059261_0550 0.35 -0.5
564,972 + Ga0059261_0550 0.35 +0.1
564,973 - Ga0059261_0550 0.35 -0.4
564,973 - Ga0059261_0550 0.35 -0.0
564,973 - Ga0059261_0550 0.35 +0.2
564,996 + Ga0059261_0550 0.37 +0.6
564,996 + Ga0059261_0550 0.37 -0.4
564,996 + Ga0059261_0550 0.37 -0.1
564,996 + Ga0059261_0550 0.37 -0.1
564,996 + Ga0059261_0550 0.37 +0.2
564,996 + Ga0059261_0550 0.37 +1.1
564,997 - Ga0059261_0550 0.38 +0.9
564,997 - Ga0059261_0550 0.38 -1.4
564,997 - Ga0059261_0550 0.38 -0.0
564,997 - Ga0059261_0550 0.38 +0.6
564,997 - Ga0059261_0550 0.38 -1.7
564,997 - Ga0059261_0550 0.38 +0.7
564,998 + +0.9
564,999 - Ga0059261_0550 0.38 -0.1
564,999 - Ga0059261_0550 0.38 -1.7
565,112 - Ga0059261_0550 0.50 -0.1
565,461 + Ga0059261_0550 0.88 -0.4
565,461 + Ga0059261_0550 0.88 +0.1
565,461 + Ga0059261_0550 0.88 +0.1
565,462 - Ga0059261_0550 0.88 +0.9
565,462 - Ga0059261_0550 0.88 +0.3
565,598 + +0.4
565,598 + -0.0
565,598 + +0.5
565,598 + +0.3
565,599 - -0.7
565,599 - -0.2

Or see this region's nucleotide sequence