Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2607

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2606 and DvMF_2607 are separated by 670 nucleotidesDvMF_2607 and DvMF_2608 are separated by 102 nucleotides DvMF_2606: DvMF_2606 - large conductance mechanosensitive channel protein (RefSeq), at 3,293,623 to 3,294,069 _2606 DvMF_2607: DvMF_2607 - Extracellular ligand-binding receptor (RefSeq), at 3,294,740 to 3,295,858 _2607 DvMF_2608: DvMF_2608 - inner-membrane translocator (RefSeq), at 3,295,961 to 3,296,869 _2608 Position (kb) 3294 3295 3296Strain fitness (log2 ratio) -2 -1 0 1at 3293.784 kb on - strand, within DvMF_2606at 3293.931 kb on + strand, within DvMF_2606at 3294.017 kb on + strand, within DvMF_2606at 3294.228 kb on - strandat 3294.978 kb on - strand, within DvMF_2607at 3295.087 kb on + strand, within DvMF_2607at 3295.198 kb on - strand, within DvMF_2607at 3295.273 kb on + strand, within DvMF_2607at 3295.365 kb on + strand, within DvMF_2607at 3295.591 kb on + strand, within DvMF_2607at 3295.665 kb on - strand, within DvMF_2607at 3295.681 kb on + strand, within DvMF_2607at 3295.893 kb on + strandat 3296.538 kb on - strand, within DvMF_2608at 3296.848 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,293,784 - DvMF_2606 0.36 -1.2
3,293,931 + DvMF_2606 0.69 -0.9
3,294,017 + DvMF_2606 0.88 -0.3
3,294,228 - -0.2
3,294,978 - DvMF_2607 0.21 -1.4
3,295,087 + DvMF_2607 0.31 -2.1
3,295,198 - DvMF_2607 0.41 -0.9
3,295,273 + DvMF_2607 0.48 -1.0
3,295,365 + DvMF_2607 0.56 -1.7
3,295,591 + DvMF_2607 0.76 -1.4
3,295,665 - DvMF_2607 0.83 -1.3
3,295,681 + DvMF_2607 0.84 -0.5
3,295,893 + -0.5
3,296,538 - DvMF_2608 0.63 -2.5
3,296,848 + -1.7

Or see this region's nucleotide sequence