Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1560 and DvMF_1561 are separated by 26 nucleotides DvMF_1561 and DvMF_1562 are separated by 432 nucleotides DvMF_1562 and DvMF_1563 are separated by 63 nucleotides
DvMF_1560: DvMF_1560 - histone family protein DNA-binding protein (RefSeq), at 1,925,395 to 1,925,688
_1560
DvMF_1561: DvMF_1561 - histidine triad (HIT) protein (RefSeq), at 1,925,715 to 1,926,134
_1561
DvMF_1562: DvMF_1562 - Radical SAM domain protein (RefSeq), at 1,926,567 to 1,927,772
_1562
DvMF_1563: DvMF_1563 - uracil-DNA glycosylase (RefSeq), at 1,927,836 to 1,929,035
_1563
Position (kb) 1926
1927
1928 Strain fitness (log2 ratio) -1
0
1 at 1925.891 kb on - strand, within DvMF_1561 at 1925.973 kb on + strand, within DvMF_1561 at 1926.001 kb on + strand, within DvMF_1561 at 1927.982 kb on + strand, within DvMF_1563 at 1928.390 kb on - strand, within DvMF_1563 at 1928.429 kb on + strand, within DvMF_1563 at 1928.627 kb on - strand, within DvMF_1563 at 1928.724 kb on - strand, within DvMF_1563 at 1928.724 kb on - strand, within DvMF_1563
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,925,891 - DvMF_1561 0.42 -0.8 1,925,973 + DvMF_1561 0.61 +0.9 1,926,001 + DvMF_1561 0.68 +0.2 1,927,982 + DvMF_1563 0.12 -0.4 1,928,390 - DvMF_1563 0.46 -0.3 1,928,429 + DvMF_1563 0.49 -0.2 1,928,627 - DvMF_1563 0.66 +0.1 1,928,724 - DvMF_1563 0.74 +1.4 1,928,724 - DvMF_1563 0.74 -0.5
Or see this region's nucleotide sequence