Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1396

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttruA and DvMF_1396 are separated by 306 nucleotidesDvMF_1396 and DvMF_1397 are separated by 320 nucleotides DvMF_1395: truA - tRNA pseudouridine synthase A (RefSeq), at 1,701,656 to 1,702,489 truA DvMF_1396: DvMF_1396 - flagellar motor switch protein FliM (RefSeq), at 1,702,796 to 1,703,776 _1396 DvMF_1397: DvMF_1397 - hypothetical protein (RefSeq), at 1,704,097 to 1,704,564 _1397 Position (kb) 1702 1703 1704Strain fitness (log2 ratio) -1 0 1at 1702.002 kb on - strand, within truAat 1702.353 kb on - strand, within truAat 1702.390 kb on - strand, within truAat 1702.461 kb on + strandat 1702.461 kb on + strandat 1702.466 kb on + strandat 1702.474 kb on - strandat 1702.737 kb on - strandat 1703.005 kb on + strand, within DvMF_1396at 1703.167 kb on + strand, within DvMF_1396at 1703.562 kb on + strand, within DvMF_1396at 1703.570 kb on - strand, within DvMF_1396at 1703.570 kb on - strand, within DvMF_1396at 1703.570 kb on - strand, within DvMF_1396at 1703.570 kb on - strand, within DvMF_1396at 1703.570 kb on - strand, within DvMF_1396at 1703.640 kb on + strand, within DvMF_1396at 1703.648 kb on - strand, within DvMF_1396at 1703.847 kb on - strandat 1703.930 kb on + strandat 1704.111 kb on + strandat 1704.119 kb on - strandat 1704.360 kb on + strand, within DvMF_1397at 1704.368 kb on + strand, within DvMF_1397at 1704.400 kb on - strand, within DvMF_1397at 1704.400 kb on - strand, within DvMF_1397at 1704.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,702,002 - truA DvMF_1395 0.41 -0.3
1,702,353 - truA DvMF_1395 0.84 -0.6
1,702,390 - truA DvMF_1395 0.88 -0.5
1,702,461 + -0.2
1,702,461 + -0.7
1,702,466 + -1.4
1,702,474 - -0.9
1,702,737 - -0.3
1,703,005 + DvMF_1396 0.21 +1.2
1,703,167 + DvMF_1396 0.38 +0.9
1,703,562 + DvMF_1396 0.78 +1.0
1,703,570 - DvMF_1396 0.79 +0.9
1,703,570 - DvMF_1396 0.79 +1.0
1,703,570 - DvMF_1396 0.79 +0.9
1,703,570 - DvMF_1396 0.79 +0.8
1,703,570 - DvMF_1396 0.79 +0.9
1,703,640 + DvMF_1396 0.86 +1.5
1,703,648 - DvMF_1396 0.87 +0.7
1,703,847 - -0.3
1,703,930 + -0.6
1,704,111 + -0.8
1,704,119 - +1.6
1,704,360 + DvMF_1397 0.56 -0.4
1,704,368 + DvMF_1397 0.58 -0.2
1,704,400 - DvMF_1397 0.65 -0.8
1,704,400 - DvMF_1397 0.65 -0.3
1,704,574 + -0.4

Or see this region's nucleotide sequence