Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1327 and DvMF_1328 are separated by 145 nucleotides DvMF_1328 and DvMF_1329 are separated by 290 nucleotides DvMF_1329 and DvMF_1330 are separated by 75 nucleotides
DvMF_1327: DvMF_1327 - hypothetical protein (RefSeq), at 1,622,511 to 1,623,554
_1327
DvMF_1328: DvMF_1328 - heavy metal-binding domain-containing protein (RefSeq), at 1,623,700 to 1,623,909
_1328
DvMF_1329: DvMF_1329 - hypothetical protein (RefSeq), at 1,624,200 to 1,624,493
_1329
DvMF_1330: DvMF_1330 - RNA modification enzyme, MiaB family (RefSeq), at 1,624,569 to 1,626,005
_1330
Position (kb)
1623
1624 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1623.040 kb on + strand, within DvMF_1327 at 1623.291 kb on + strand, within DvMF_1327 at 1623.326 kb on - strand, within DvMF_1327 at 1623.477 kb on - strand at 1623.744 kb on - strand, within DvMF_1328 at 1623.887 kb on + strand, within DvMF_1328 at 1624.094 kb on - strand at 1624.126 kb on + strand at 1624.250 kb on - strand, within DvMF_1329 at 1624.349 kb on + strand, within DvMF_1329 at 1624.414 kb on - strand, within DvMF_1329 at 1624.450 kb on - strand, within DvMF_1329 at 1624.512 kb on + strand at 1624.666 kb on - strand at 1624.716 kb on + strand, within DvMF_1330 at 1624.757 kb on - strand, within DvMF_1330 at 1624.821 kb on - strand, within DvMF_1330
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,623,040 + DvMF_1327 0.51 -0.5 1,623,291 + DvMF_1327 0.75 -0.2 1,623,326 - DvMF_1327 0.78 -0.5 1,623,477 - -0.3 1,623,744 - DvMF_1328 0.21 -1.1 1,623,887 + DvMF_1328 0.89 +0.3 1,624,094 - -0.2 1,624,126 + -0.3 1,624,250 - DvMF_1329 0.17 +3.0 1,624,349 + DvMF_1329 0.51 +0.0 1,624,414 - DvMF_1329 0.73 -0.5 1,624,450 - DvMF_1329 0.85 -1.0 1,624,512 + -0.3 1,624,666 - +0.0 1,624,716 + DvMF_1330 0.10 -0.7 1,624,757 - DvMF_1330 0.13 +0.1 1,624,821 - DvMF_1330 0.18 -0.4
Or see this region's nucleotide sequence