Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3651 and Shew_3652 are separated by 16 nucleotides Shew_3652 and Shew_3653 are separated by 111 nucleotides Shew_3653 and Shew_3654 are separated by 524 nucleotides
Shew_3651: Shew_3651 - hypothetical protein (RefSeq), at 4,351,783 to 4,352,793
_3651
Shew_3652: Shew_3652 - LemA family protein (RefSeq), at 4,352,810 to 4,353,379
_3652
Shew_3653: Shew_3653 - hypothetical protein (RefSeq), at 4,353,491 to 4,353,730
_3653
Shew_3654: Shew_3654 - AbgT putative transporter (RefSeq), at 4,354,255 to 4,355,868
_3654
Position (kb) 4352
4353
4354 Strain fitness (log2 ratio) -1
0
1 at 4352.257 kb on - strand, within Shew_3651 at 4352.299 kb on + strand, within Shew_3651 at 4352.635 kb on - strand, within Shew_3651 at 4352.885 kb on - strand, within Shew_3652 at 4352.885 kb on - strand, within Shew_3652 at 4352.885 kb on - strand, within Shew_3652 at 4353.033 kb on + strand, within Shew_3652 at 4353.064 kb on + strand, within Shew_3652 at 4353.158 kb on - strand, within Shew_3652 at 4353.297 kb on + strand, within Shew_3652 at 4353.297 kb on + strand, within Shew_3652 at 4353.297 kb on + strand, within Shew_3652 at 4353.297 kb on + strand, within Shew_3652 at 4353.297 kb on + strand, within Shew_3652 at 4353.360 kb on - strand at 4353.365 kb on - strand at 4353.570 kb on + strand, within Shew_3653 at 4353.862 kb on - strand at 4354.303 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM remove 4,352,257 - Shew_3651 0.47 +0.2 4,352,299 + Shew_3651 0.51 +0.1 4,352,635 - Shew_3651 0.84 +0.2 4,352,885 - Shew_3652 0.13 +0.0 4,352,885 - Shew_3652 0.13 +0.1 4,352,885 - Shew_3652 0.13 +0.0 4,353,033 + Shew_3652 0.39 +0.5 4,353,064 + Shew_3652 0.45 +0.1 4,353,158 - Shew_3652 0.61 -0.1 4,353,297 + Shew_3652 0.85 +0.5 4,353,297 + Shew_3652 0.85 +1.4 4,353,297 + Shew_3652 0.85 +1.0 4,353,297 + Shew_3652 0.85 +0.5 4,353,297 + Shew_3652 0.85 +0.5 4,353,360 - -0.1 4,353,365 - +1.1 4,353,570 + Shew_3653 0.33 +0.4 4,353,862 - +0.1 4,354,303 - +0.2
Or see this region's nucleotide sequence