Experiment: 1-ethyl-3-methylimidazolium chloride 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0789 and Shew_0790 are separated by 16 nucleotides Shew_0790 and Shew_0791 are separated by 347 nucleotides Shew_0791 and Shew_0792 are separated by 197 nucleotides Shew_0792 and Shew_0793 are separated by 176 nucleotides
Shew_0789: Shew_0789 - Mg2+ transporter protein, CorA family protein (RefSeq), at 901,545 to 902,513
_0789
Shew_0790: Shew_0790 - hypothetical protein (RefSeq), at 902,530 to 903,081
_0790
Shew_0791: Shew_0791 - spermine synthase (RefSeq), at 903,429 to 904,172
_0791
Shew_0792: Shew_0792 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 904,370 to 904,939
_0792
Shew_0793: Shew_0793 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 905,116 to 906,681
_0793
Position (kb) 903
904
905 Strain fitness (log2 ratio) -1
0
1 at 902.491 kb on + strand at 902.579 kb on + strand at 902.719 kb on + strand, within Shew_0790 at 902.868 kb on - strand, within Shew_0790 at 902.967 kb on + strand, within Shew_0790 at 902.975 kb on - strand, within Shew_0790 at 903.226 kb on - strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.256 kb on - strand at 903.256 kb on - strand at 903.292 kb on + strand at 903.294 kb on + strand at 903.381 kb on - strand at 903.522 kb on - strand, within Shew_0791 at 903.526 kb on + strand, within Shew_0791 at 903.550 kb on + strand, within Shew_0791 at 903.568 kb on - strand, within Shew_0791 at 903.669 kb on - strand, within Shew_0791 at 903.917 kb on + strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 903.925 kb on - strand, within Shew_0791 at 904.523 kb on - strand, within Shew_0792 at 904.561 kb on + strand, within Shew_0792 at 904.569 kb on - strand, within Shew_0792 at 904.722 kb on + strand, within Shew_0792 at 904.809 kb on + strand, within Shew_0792 at 904.809 kb on + strand, within Shew_0792 at 904.817 kb on - strand, within Shew_0792 at 904.877 kb on + strand, within Shew_0792 at 904.878 kb on + strand, within Shew_0792 at 904.892 kb on + strand at 904.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 50 mM remove 902,491 + -0.1 902,579 + -0.3 902,719 + Shew_0790 0.34 +0.1 902,868 - Shew_0790 0.61 +0.1 902,967 + Shew_0790 0.79 -0.2 902,975 - Shew_0790 0.81 -0.4 903,226 - +1.3 903,248 + -0.7 903,248 + +0.2 903,248 + -0.4 903,248 + +0.4 903,248 + +0.2 903,256 - +0.0 903,256 - -0.2 903,292 + -0.3 903,294 + -0.1 903,381 - +0.4 903,522 - Shew_0791 0.12 +0.2 903,526 + Shew_0791 0.13 -0.2 903,550 + Shew_0791 0.16 +0.3 903,568 - Shew_0791 0.19 +1.1 903,669 - Shew_0791 0.32 +0.8 903,917 + Shew_0791 0.66 +0.3 903,925 - Shew_0791 0.67 -0.8 903,925 - Shew_0791 0.67 -0.2 903,925 - Shew_0791 0.67 +0.4 903,925 - Shew_0791 0.67 +0.0 903,925 - Shew_0791 0.67 +0.4 904,523 - Shew_0792 0.27 +0.5 904,561 + Shew_0792 0.34 -0.4 904,569 - Shew_0792 0.35 -0.1 904,722 + Shew_0792 0.62 -1.7 904,809 + Shew_0792 0.77 -0.7 904,809 + Shew_0792 0.77 +1.6 904,817 - Shew_0792 0.78 +0.1 904,877 + Shew_0792 0.89 -0.2 904,878 + Shew_0792 0.89 -0.5 904,892 + +0.1 904,892 + +1.4
Or see this region's nucleotide sequence