Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4202

Experiment: m.b. Benzethonium chloride 0.008 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_4200 and Dshi_4201 overlap by 4 nucleotidesDshi_4201 and Dshi_4202 overlap by 4 nucleotidesDshi_4202 and Dshi_4203 are separated by 47 nucleotides Dshi_4200: Dshi_4200 - Carbon-monoxide dehydrogenase (acceptor) (RefSeq), at 46,743 to 47,576 _4200 Dshi_4201: Dshi_4201 - (2Fe-2S)-binding domain protein (RefSeq), at 47,573 to 48,073 _4201 Dshi_4202: Dshi_4202 - Carbon-monoxide dehydrogenase (acceptor) (RefSeq), at 48,070 to 50,451 _4202 Dshi_4203: Dshi_4203 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 50,499 to 51,551 _4203 Position (kb) 48 49 50 51Strain fitness (log2 ratio) -1 0 1 2at 47.297 kb on + strand, within Dshi_4200at 47.316 kb on - strand, within Dshi_4200at 47.331 kb on + strand, within Dshi_4200at 47.589 kb on - strandat 47.630 kb on + strand, within Dshi_4201at 47.638 kb on + strand, within Dshi_4201at 47.638 kb on - strand, within Dshi_4201at 47.651 kb on + strandat 47.690 kb on - strand, within Dshi_4201at 47.816 kb on + strand, within Dshi_4201at 48.159 kb on - strandat 48.231 kb on - strandat 48.328 kb on + strand, within Dshi_4202at 48.348 kb on - strand, within Dshi_4202at 49.104 kb on - strand, within Dshi_4202at 49.322 kb on + strand, within Dshi_4202at 49.332 kb on + strandat 49.399 kb on + strand, within Dshi_4202at 49.400 kb on - strand, within Dshi_4202at 49.484 kb on - strand, within Dshi_4202at 49.620 kb on + strand, within Dshi_4202at 49.620 kb on + strand, within Dshi_4202at 49.962 kb on - strand, within Dshi_4202at 49.998 kb on + strand, within Dshi_4202at 50.107 kb on - strand, within Dshi_4202at 50.324 kb on - strandat 50.366 kb on + strandat 50.516 kb on + strandat 50.632 kb on - strand, within Dshi_4203at 50.639 kb on + strand, within Dshi_4203at 50.660 kb on + strand, within Dshi_4203at 50.678 kb on - strand, within Dshi_4203at 50.784 kb on + strand, within Dshi_4203at 50.846 kb on + strand, within Dshi_4203at 50.890 kb on - strand, within Dshi_4203at 50.896 kb on - strand, within Dshi_4203at 50.922 kb on - strand, within Dshi_4203at 51.164 kb on + strand, within Dshi_4203at 51.194 kb on + strand, within Dshi_4203at 51.196 kb on - strand, within Dshi_4203at 51.372 kb on - strand, within Dshi_4203at 51.374 kb on + strand, within Dshi_4203at 51.414 kb on + strand, within Dshi_4203

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
remove
47,297 + Dshi_4200 0.66 -1.2
47,316 - Dshi_4200 0.69 +0.6
47,331 + Dshi_4200 0.71 -0.1
47,589 - +0.6
47,630 + Dshi_4201 0.11 -0.4
47,638 + Dshi_4201 0.13 -0.4
47,638 - Dshi_4201 0.13 -1.0
47,651 + -0.4
47,690 - Dshi_4201 0.23 -0.9
47,816 + Dshi_4201 0.49 -0.8
48,159 - -1.7
48,231 - -1.7
48,328 + Dshi_4202 0.11 -1.6
48,348 - Dshi_4202 0.12 +2.3
49,104 - Dshi_4202 0.43 +0.1
49,322 + Dshi_4202 0.53 -1.4
49,332 + +1.6
49,399 + Dshi_4202 0.56 +1.7
49,400 - Dshi_4202 0.56 +0.8
49,484 - Dshi_4202 0.59 +0.7
49,620 + Dshi_4202 0.65 +0.3
49,620 + Dshi_4202 0.65 +0.1
49,962 - Dshi_4202 0.79 +1.1
49,998 + Dshi_4202 0.81 -0.5
50,107 - Dshi_4202 0.86 -0.3
50,324 - -1.4
50,366 + -1.0
50,516 + -1.4
50,632 - Dshi_4203 0.13 +0.8
50,639 + Dshi_4203 0.13 -1.0
50,660 + Dshi_4203 0.15 -1.4
50,678 - Dshi_4203 0.17 +0.6
50,784 + Dshi_4203 0.27 -0.1
50,846 + Dshi_4203 0.33 +1.0
50,890 - Dshi_4203 0.37 -1.1
50,896 - Dshi_4203 0.38 -1.6
50,922 - Dshi_4203 0.40 -1.4
51,164 + Dshi_4203 0.63 -1.1
51,194 + Dshi_4203 0.66 +0.4
51,196 - Dshi_4203 0.66 +1.9
51,372 - Dshi_4203 0.83 +0.2
51,374 + Dshi_4203 0.83 +0.4
51,414 + Dshi_4203 0.87 +0.6

Or see this region's nucleotide sequence