Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3840

Experiment: m.b. Benzethonium chloride 0.008 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3838 and Dshi_3839 are separated by 135 nucleotidesDshi_3839 and Dshi_3840 are separated by 60 nucleotidesDshi_3840 and Dshi_3841 overlap by 1 nucleotides Dshi_3838: Dshi_3838 - hypothetical protein (RefSeq), at 46,686 to 48,080 _3838 Dshi_3839: Dshi_3839 - Ferritin Dps family protein (RefSeq), at 48,216 to 48,713 _3839 Dshi_3840: Dshi_3840 - thiamine pyrophosphate protein TPP binding domain protein (RefSeq), at 48,774 to 50,414 _3840 Dshi_3841: Dshi_3841 - Glutamate dehydrogenase (NADP(+)) (RefSeq), at 50,414 to 51,757 _3841 Position (kb) 48 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 47.793 kb on + strand, within Dshi_3838at 47.800 kb on + strand, within Dshi_3838at 47.800 kb on - strand, within Dshi_3838at 47.859 kb on + strand, within Dshi_3838at 47.899 kb on + strand, within Dshi_3838at 47.912 kb on - strand, within Dshi_3838at 47.931 kb on - strand, within Dshi_3838at 47.931 kb on - strand, within Dshi_3838at 47.941 kb on + strandat 48.096 kb on + strandat 48.205 kb on + strandat 48.327 kb on - strand, within Dshi_3839at 48.327 kb on - strand, within Dshi_3839at 48.329 kb on - strand, within Dshi_3839at 48.552 kb on + strand, within Dshi_3839at 48.589 kb on + strand, within Dshi_3839at 48.610 kb on - strand, within Dshi_3839at 48.672 kb on - strandat 48.771 kb on + strandat 48.771 kb on + strandat 48.855 kb on + strandat 49.007 kb on + strand, within Dshi_3840at 49.015 kb on - strand, within Dshi_3840at 49.161 kb on + strand, within Dshi_3840at 49.172 kb on + strand, within Dshi_3840at 49.174 kb on - strand, within Dshi_3840at 49.191 kb on + strand, within Dshi_3840at 49.327 kb on - strand, within Dshi_3840at 49.385 kb on + strand, within Dshi_3840at 49.581 kb on - strand, within Dshi_3840at 49.663 kb on - strand, within Dshi_3840at 49.694 kb on + strand, within Dshi_3840at 49.779 kb on + strand, within Dshi_3840at 50.114 kb on - strand, within Dshi_3840at 50.328 kb on - strandat 50.393 kb on - strandat 50.431 kb on - strandat 50.585 kb on - strand, within Dshi_3841at 50.587 kb on + strand, within Dshi_3841at 50.616 kb on - strand, within Dshi_3841at 50.783 kb on + strand, within Dshi_3841at 50.801 kb on - strand, within Dshi_3841at 50.801 kb on - strand, within Dshi_3841at 50.818 kb on + strand, within Dshi_3841at 50.877 kb on + strand, within Dshi_3841at 50.885 kb on - strand, within Dshi_3841at 50.885 kb on - strand, within Dshi_3841at 50.975 kb on + strand, within Dshi_3841at 50.982 kb on - strand, within Dshi_3841at 50.983 kb on - strand, within Dshi_3841at 50.988 kb on - strand, within Dshi_3841at 51.243 kb on + strand, within Dshi_3841at 51.254 kb on - strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841at 51.381 kb on + strand, within Dshi_3841

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
remove
47,793 + Dshi_3838 0.79 -0.7
47,800 + Dshi_3838 0.80 -3.6
47,800 - Dshi_3838 0.80 +0.1
47,859 + Dshi_3838 0.84 +0.5
47,899 + Dshi_3838 0.87 +0.3
47,912 - Dshi_3838 0.88 -0.8
47,931 - Dshi_3838 0.89 +2.0
47,931 - Dshi_3838 0.89 +0.5
47,941 + +0.1
48,096 + +0.0
48,205 + +1.5
48,327 - Dshi_3839 0.22 -0.4
48,327 - Dshi_3839 0.22 +0.8
48,329 - Dshi_3839 0.23 +0.9
48,552 + Dshi_3839 0.67 +0.3
48,589 + Dshi_3839 0.75 +0.3
48,610 - Dshi_3839 0.79 +1.2
48,672 - +0.9
48,771 + -0.5
48,771 + -0.4
48,855 + -0.9
49,007 + Dshi_3840 0.14 -0.1
49,015 - Dshi_3840 0.15 -0.3
49,161 + Dshi_3840 0.24 -0.0
49,172 + Dshi_3840 0.24 -1.0
49,174 - Dshi_3840 0.24 +1.8
49,191 + Dshi_3840 0.25 +0.0
49,327 - Dshi_3840 0.34 +0.7
49,385 + Dshi_3840 0.37 +0.2
49,581 - Dshi_3840 0.49 -0.5
49,663 - Dshi_3840 0.54 -2.8
49,694 + Dshi_3840 0.56 +0.4
49,779 + Dshi_3840 0.61 +0.8
50,114 - Dshi_3840 0.82 +1.0
50,328 - +0.6
50,393 - -1.6
50,431 - +0.1
50,585 - Dshi_3841 0.13 -1.9
50,587 + Dshi_3841 0.13 -0.3
50,616 - Dshi_3841 0.15 +0.9
50,783 + Dshi_3841 0.27 -0.2
50,801 - Dshi_3841 0.29 +1.4
50,801 - Dshi_3841 0.29 +0.6
50,818 + Dshi_3841 0.30 +0.6
50,877 + Dshi_3841 0.34 +1.7
50,885 - Dshi_3841 0.35 -1.1
50,885 - Dshi_3841 0.35 +2.2
50,975 + Dshi_3841 0.42 -1.6
50,982 - Dshi_3841 0.42 +1.2
50,983 - Dshi_3841 0.42 +0.8
50,988 - Dshi_3841 0.43 +0.5
51,243 + Dshi_3841 0.62 +1.1
51,254 - Dshi_3841 0.62 +0.1
51,381 + Dshi_3841 0.72 -0.7
51,381 + Dshi_3841 0.72 +3.7
51,381 + Dshi_3841 0.72 +0.3

Or see this region's nucleotide sequence