Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3526 and Dshi_3527 are separated by 113 nucleotides Dshi_3527 and Dshi_3528 overlap by 4 nucleotides Dshi_3528 and Dshi_3529 are separated by 13 nucleotides
Dshi_3526: Dshi_3526 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,704,933 to 3,706,909
_3526
Dshi_3527: Dshi_3527 - isopentenyl-diphosphate delta-isomerase, type 1 (RefSeq), at 3,707,023 to 3,707,553
_3527
Dshi_3528: Dshi_3528 - geranylgeranyl reductase (RefSeq), at 3,707,550 to 3,708,734
_3528
Dshi_3529: Dshi_3529 - PUCC protein (RefSeq), at 3,708,748 to 3,710,049
_3529
Position (kb)
3707
3708
3709 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3706.571 kb on - strand, within Dshi_3526 at 3706.663 kb on + strand, within Dshi_3526 at 3706.896 kb on - strand at 3707.780 kb on - strand, within Dshi_3528 at 3707.800 kb on + strand, within Dshi_3528 at 3707.812 kb on + strand, within Dshi_3528 at 3708.023 kb on + strand, within Dshi_3528 at 3708.067 kb on + strand, within Dshi_3528 at 3708.072 kb on + strand, within Dshi_3528 at 3708.236 kb on + strand, within Dshi_3528 at 3708.549 kb on - strand, within Dshi_3528 at 3708.549 kb on - strand, within Dshi_3528 at 3708.677 kb on + strand at 3708.677 kb on - strand at 3708.722 kb on + strand at 3708.730 kb on - strand at 3708.730 kb on - strand at 3708.778 kb on - strand at 3708.778 kb on - strand at 3708.844 kb on - strand at 3708.920 kb on - strand, within Dshi_3529 at 3709.115 kb on + strand, within Dshi_3529 at 3709.117 kb on - strand, within Dshi_3529 at 3709.119 kb on + strand, within Dshi_3529 at 3709.198 kb on + strand, within Dshi_3529 at 3709.198 kb on + strand, within Dshi_3529 at 3709.206 kb on - strand, within Dshi_3529 at 3709.270 kb on - strand, within Dshi_3529 at 3709.271 kb on + strand, within Dshi_3529 at 3709.289 kb on - strand, within Dshi_3529 at 3709.300 kb on + strand, within Dshi_3529 at 3709.349 kb on + strand, within Dshi_3529 at 3709.371 kb on - strand, within Dshi_3529 at 3709.682 kb on + strand, within Dshi_3529 at 3709.731 kb on - strand, within Dshi_3529
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 3,706,571 - Dshi_3526 0.83 -0.1 3,706,663 + Dshi_3526 0.88 -0.4 3,706,896 - +0.4 3,707,780 - Dshi_3528 0.19 +0.7 3,707,800 + Dshi_3528 0.21 +0.1 3,707,812 + Dshi_3528 0.22 +0.1 3,708,023 + Dshi_3528 0.40 +1.1 3,708,067 + Dshi_3528 0.44 +1.3 3,708,072 + Dshi_3528 0.44 +1.2 3,708,236 + Dshi_3528 0.58 -2.7 3,708,549 - Dshi_3528 0.84 +0.4 3,708,549 - Dshi_3528 0.84 +0.7 3,708,677 + +0.6 3,708,677 - -0.7 3,708,722 + -0.9 3,708,730 - -2.4 3,708,730 - +1.4 3,708,778 - +0.0 3,708,778 - +0.3 3,708,844 - -1.1 3,708,920 - Dshi_3529 0.13 -1.7 3,709,115 + Dshi_3529 0.28 +1.0 3,709,117 - Dshi_3529 0.28 +0.8 3,709,119 + Dshi_3529 0.28 -0.7 3,709,198 + Dshi_3529 0.35 -1.9 3,709,198 + Dshi_3529 0.35 +0.2 3,709,206 - Dshi_3529 0.35 +4.2 3,709,270 - Dshi_3529 0.40 +0.6 3,709,271 + Dshi_3529 0.40 -2.7 3,709,289 - Dshi_3529 0.42 +1.5 3,709,300 + Dshi_3529 0.42 -3.3 3,709,349 + Dshi_3529 0.46 -2.9 3,709,371 - Dshi_3529 0.48 +0.5 3,709,682 + Dshi_3529 0.72 -1.1 3,709,731 - Dshi_3529 0.75 -0.4
Or see this region's nucleotide sequence