Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3517

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3516 and Dshi_3517 overlap by 4 nucleotidesDshi_3517 and Dshi_3518 are separated by 35 nucleotides Dshi_3516: Dshi_3516 - chlorophyll synthesis pathway, BchC (RefSeq), at 3,695,777 to 3,696,715 _3516 Dshi_3517: Dshi_3517 - chlorophyllide reductase iron protein subunit X (RefSeq), at 3,696,712 to 3,697,719 _3517 Dshi_3518: Dshi_3518 - chlorophyllide reductase subunit Y (RefSeq), at 3,697,755 to 3,699,359 _3518 Position (kb) 3696 3697 3698Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3695.723 kb on - strandat 3695.830 kb on - strandat 3696.009 kb on + strand, within Dshi_3516at 3696.084 kb on - strand, within Dshi_3516at 3696.336 kb on + strand, within Dshi_3516at 3696.408 kb on - strand, within Dshi_3516at 3696.492 kb on + strand, within Dshi_3516at 3696.539 kb on + strand, within Dshi_3516at 3696.575 kb on - strand, within Dshi_3516at 3696.629 kb on - strandat 3696.785 kb on + strandat 3696.793 kb on - strandat 3696.827 kb on - strand, within Dshi_3517at 3696.870 kb on - strand, within Dshi_3517at 3696.972 kb on + strand, within Dshi_3517at 3697.070 kb on + strand, within Dshi_3517at 3697.214 kb on - strand, within Dshi_3517at 3697.239 kb on + strand, within Dshi_3517at 3697.239 kb on + strand, within Dshi_3517at 3697.267 kb on + strand, within Dshi_3517at 3697.279 kb on - strand, within Dshi_3517at 3697.305 kb on + strand, within Dshi_3517at 3697.385 kb on + strand, within Dshi_3517at 3697.393 kb on - strand, within Dshi_3517at 3697.404 kb on - strand, within Dshi_3517at 3697.451 kb on + strand, within Dshi_3517at 3697.459 kb on - strand, within Dshi_3517at 3697.533 kb on + strand, within Dshi_3517at 3697.541 kb on - strand, within Dshi_3517at 3697.541 kb on - strand, within Dshi_3517at 3697.674 kb on + strandat 3697.729 kb on + strandat 3697.737 kb on - strandat 3697.788 kb on - strandat 3697.851 kb on - strandat 3697.927 kb on + strand, within Dshi_3518at 3697.999 kb on + strand, within Dshi_3518at 3698.075 kb on - strand, within Dshi_3518at 3698.096 kb on - strand, within Dshi_3518at 3698.142 kb on + strand, within Dshi_3518at 3698.186 kb on + strand, within Dshi_3518at 3698.218 kb on - strand, within Dshi_3518at 3698.257 kb on - strand, within Dshi_3518at 3698.265 kb on + strand, within Dshi_3518at 3698.273 kb on - strand, within Dshi_3518at 3698.274 kb on + strand, within Dshi_3518at 3698.335 kb on - strand, within Dshi_3518at 3698.478 kb on + strand, within Dshi_3518at 3698.486 kb on + strand, within Dshi_3518at 3698.491 kb on + strand, within Dshi_3518at 3698.501 kb on + strand, within Dshi_3518at 3698.501 kb on + strand, within Dshi_3518at 3698.560 kb on + strand, within Dshi_3518at 3698.594 kb on - strand, within Dshi_3518at 3698.624 kb on - strand, within Dshi_3518at 3698.653 kb on - strand, within Dshi_3518at 3698.690 kb on - strand, within Dshi_3518

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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3,695,723 - -4.2
3,695,830 - +0.2
3,696,009 + Dshi_3516 0.25 -1.1
3,696,084 - Dshi_3516 0.33 +1.4
3,696,336 + Dshi_3516 0.60 +1.4
3,696,408 - Dshi_3516 0.67 -0.0
3,696,492 + Dshi_3516 0.76 +0.2
3,696,539 + Dshi_3516 0.81 +0.3
3,696,575 - Dshi_3516 0.85 +2.1
3,696,629 - +1.0
3,696,785 + -2.1
3,696,793 - +0.9
3,696,827 - Dshi_3517 0.11 +1.0
3,696,870 - Dshi_3517 0.16 +0.4
3,696,972 + Dshi_3517 0.26 +1.8
3,697,070 + Dshi_3517 0.36 +1.1
3,697,214 - Dshi_3517 0.50 -1.0
3,697,239 + Dshi_3517 0.52 +1.3
3,697,239 + Dshi_3517 0.52 +0.3
3,697,267 + Dshi_3517 0.55 +1.7
3,697,279 - Dshi_3517 0.56 -0.4
3,697,305 + Dshi_3517 0.59 -1.7
3,697,385 + Dshi_3517 0.67 -1.0
3,697,393 - Dshi_3517 0.68 -0.3
3,697,404 - Dshi_3517 0.69 +1.2
3,697,451 + Dshi_3517 0.73 -4.1
3,697,459 - Dshi_3517 0.74 -0.1
3,697,533 + Dshi_3517 0.81 -0.4
3,697,541 - Dshi_3517 0.82 -1.5
3,697,541 - Dshi_3517 0.82 +0.6
3,697,674 + +0.2
3,697,729 + +1.6
3,697,737 - -2.1
3,697,788 - +2.5
3,697,851 - -2.9
3,697,927 + Dshi_3518 0.11 -1.1
3,697,999 + Dshi_3518 0.15 +1.0
3,698,075 - Dshi_3518 0.20 +1.0
3,698,096 - Dshi_3518 0.21 +0.8
3,698,142 + Dshi_3518 0.24 +1.9
3,698,186 + Dshi_3518 0.27 +1.0
3,698,218 - Dshi_3518 0.29 -0.7
3,698,257 - Dshi_3518 0.31 +1.0
3,698,265 + Dshi_3518 0.32 +2.2
3,698,273 - Dshi_3518 0.32 +1.0
3,698,274 + Dshi_3518 0.32 +4.6
3,698,335 - Dshi_3518 0.36 +1.2
3,698,478 + Dshi_3518 0.45 +2.7
3,698,486 + Dshi_3518 0.46 -0.6
3,698,491 + Dshi_3518 0.46 +1.0
3,698,501 + Dshi_3518 0.46 +0.3
3,698,501 + Dshi_3518 0.46 +3.2
3,698,560 + Dshi_3518 0.50 -0.6
3,698,594 - Dshi_3518 0.52 +0.6
3,698,624 - Dshi_3518 0.54 +0.9
3,698,653 - Dshi_3518 0.56 -4.1
3,698,690 - Dshi_3518 0.58 +2.0

Or see this region's nucleotide sequence