Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3106 and Dshi_3107 are separated by 90 nucleotides Dshi_3107 and Dshi_3108 are separated by 133 nucleotides Dshi_3108 and Dshi_3109 are separated by 4 nucleotides
Dshi_3106: Dshi_3106 - pseudouridine synthase (RefSeq), at 3,272,254 to 3,272,913
_3106
Dshi_3107: Dshi_3107 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 3,273,004 to 3,273,621
_3107
Dshi_3108: Dshi_3108 - DSBA oxidoreductase (RefSeq), at 3,273,755 to 3,274,522
_3108
Dshi_3109: Dshi_3109 - hypothetical protein (RefSeq), at 3,274,527 to 3,276,476
_3109
Position (kb)
3273
3274
3275 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3272.765 kb on - strand, within Dshi_3106 at 3272.772 kb on - strand, within Dshi_3106 at 3272.792 kb on - strand, within Dshi_3106 at 3272.891 kb on - strand at 3272.984 kb on - strand at 3273.038 kb on + strand at 3273.046 kb on - strand at 3273.140 kb on + strand, within Dshi_3107 at 3273.140 kb on + strand, within Dshi_3107 at 3273.145 kb on + strand, within Dshi_3107 at 3273.162 kb on - strand, within Dshi_3107 at 3273.283 kb on + strand, within Dshi_3107 at 3273.306 kb on + strand, within Dshi_3107 at 3273.474 kb on - strand, within Dshi_3107 at 3273.479 kb on - strand, within Dshi_3107 at 3273.479 kb on - strand, within Dshi_3107 at 3273.537 kb on - strand, within Dshi_3107 at 3273.634 kb on + strand at 3273.634 kb on + strand at 3273.671 kb on + strand at 3273.743 kb on + strand at 3273.799 kb on - strand at 3273.812 kb on + strand at 3273.812 kb on + strand at 3273.820 kb on - strand at 3273.929 kb on - strand, within Dshi_3108 at 3274.214 kb on + strand, within Dshi_3108 at 3274.285 kb on - strand, within Dshi_3108 at 3274.301 kb on + strand, within Dshi_3108 at 3274.334 kb on + strand, within Dshi_3108 at 3274.352 kb on - strand, within Dshi_3108 at 3274.442 kb on - strand, within Dshi_3108 at 3274.508 kb on - strand at 3274.562 kb on + strand at 3274.570 kb on - strand at 3274.570 kb on - strand at 3274.597 kb on - strand at 3274.599 kb on - strand at 3274.627 kb on - strand at 3274.631 kb on - strand at 3274.686 kb on - strand at 3275.297 kb on + strand, within Dshi_3109 at 3275.382 kb on - strand, within Dshi_3109
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 3,272,765 - Dshi_3106 0.77 +0.3 3,272,772 - Dshi_3106 0.78 +0.2 3,272,792 - Dshi_3106 0.82 +1.0 3,272,891 - +1.6 3,272,984 - +1.1 3,273,038 + +1.3 3,273,046 - +0.8 3,273,140 + Dshi_3107 0.22 -1.3 3,273,140 + Dshi_3107 0.22 +0.1 3,273,145 + Dshi_3107 0.23 +0.9 3,273,162 - Dshi_3107 0.26 -0.9 3,273,283 + Dshi_3107 0.45 -0.6 3,273,306 + Dshi_3107 0.49 -0.8 3,273,474 - Dshi_3107 0.76 -0.0 3,273,479 - Dshi_3107 0.77 -2.0 3,273,479 - Dshi_3107 0.77 -0.9 3,273,537 - Dshi_3107 0.86 -3.2 3,273,634 + -2.3 3,273,634 + -2.0 3,273,671 + +2.3 3,273,743 + +0.8 3,273,799 - +0.3 3,273,812 + -2.0 3,273,812 + -0.5 3,273,820 - +0.4 3,273,929 - Dshi_3108 0.23 -2.0 3,274,214 + Dshi_3108 0.60 -1.5 3,274,285 - Dshi_3108 0.69 +0.8 3,274,301 + Dshi_3108 0.71 -0.5 3,274,334 + Dshi_3108 0.75 +0.9 3,274,352 - Dshi_3108 0.78 -0.5 3,274,442 - Dshi_3108 0.89 +0.3 3,274,508 - +0.6 3,274,562 + +0.8 3,274,570 - +0.9 3,274,570 - -0.8 3,274,597 - -0.0 3,274,599 - +0.4 3,274,627 - -1.8 3,274,631 - -0.5 3,274,686 - -0.6 3,275,297 + Dshi_3109 0.39 +0.4 3,275,382 - Dshi_3109 0.44 -0.6
Or see this region's nucleotide sequence