Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3108

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3106 and Dshi_3107 are separated by 90 nucleotidesDshi_3107 and Dshi_3108 are separated by 133 nucleotidesDshi_3108 and Dshi_3109 are separated by 4 nucleotides Dshi_3106: Dshi_3106 - pseudouridine synthase (RefSeq), at 3,272,254 to 3,272,913 _3106 Dshi_3107: Dshi_3107 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 3,273,004 to 3,273,621 _3107 Dshi_3108: Dshi_3108 - DSBA oxidoreductase (RefSeq), at 3,273,755 to 3,274,522 _3108 Dshi_3109: Dshi_3109 - hypothetical protein (RefSeq), at 3,274,527 to 3,276,476 _3109 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3272.765 kb on - strand, within Dshi_3106at 3272.772 kb on - strand, within Dshi_3106at 3272.792 kb on - strand, within Dshi_3106at 3272.891 kb on - strandat 3272.984 kb on - strandat 3273.038 kb on + strandat 3273.046 kb on - strandat 3273.140 kb on + strand, within Dshi_3107at 3273.140 kb on + strand, within Dshi_3107at 3273.145 kb on + strand, within Dshi_3107at 3273.162 kb on - strand, within Dshi_3107at 3273.283 kb on + strand, within Dshi_3107at 3273.306 kb on + strand, within Dshi_3107at 3273.474 kb on - strand, within Dshi_3107at 3273.479 kb on - strand, within Dshi_3107at 3273.479 kb on - strand, within Dshi_3107at 3273.537 kb on - strand, within Dshi_3107at 3273.634 kb on + strandat 3273.634 kb on + strandat 3273.671 kb on + strandat 3273.743 kb on + strandat 3273.799 kb on - strandat 3273.812 kb on + strandat 3273.812 kb on + strandat 3273.820 kb on - strandat 3273.929 kb on - strand, within Dshi_3108at 3274.214 kb on + strand, within Dshi_3108at 3274.285 kb on - strand, within Dshi_3108at 3274.301 kb on + strand, within Dshi_3108at 3274.334 kb on + strand, within Dshi_3108at 3274.352 kb on - strand, within Dshi_3108at 3274.442 kb on - strand, within Dshi_3108at 3274.508 kb on - strandat 3274.562 kb on + strandat 3274.570 kb on - strandat 3274.570 kb on - strandat 3274.597 kb on - strandat 3274.599 kb on - strandat 3274.627 kb on - strandat 3274.631 kb on - strandat 3274.686 kb on - strandat 3275.297 kb on + strand, within Dshi_3109at 3275.382 kb on - strand, within Dshi_3109

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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3,272,765 - Dshi_3106 0.77 +0.3
3,272,772 - Dshi_3106 0.78 +0.2
3,272,792 - Dshi_3106 0.82 +1.0
3,272,891 - +1.6
3,272,984 - +1.1
3,273,038 + +1.3
3,273,046 - +0.8
3,273,140 + Dshi_3107 0.22 -1.3
3,273,140 + Dshi_3107 0.22 +0.1
3,273,145 + Dshi_3107 0.23 +0.9
3,273,162 - Dshi_3107 0.26 -0.9
3,273,283 + Dshi_3107 0.45 -0.6
3,273,306 + Dshi_3107 0.49 -0.8
3,273,474 - Dshi_3107 0.76 -0.0
3,273,479 - Dshi_3107 0.77 -2.0
3,273,479 - Dshi_3107 0.77 -0.9
3,273,537 - Dshi_3107 0.86 -3.2
3,273,634 + -2.3
3,273,634 + -2.0
3,273,671 + +2.3
3,273,743 + +0.8
3,273,799 - +0.3
3,273,812 + -2.0
3,273,812 + -0.5
3,273,820 - +0.4
3,273,929 - Dshi_3108 0.23 -2.0
3,274,214 + Dshi_3108 0.60 -1.5
3,274,285 - Dshi_3108 0.69 +0.8
3,274,301 + Dshi_3108 0.71 -0.5
3,274,334 + Dshi_3108 0.75 +0.9
3,274,352 - Dshi_3108 0.78 -0.5
3,274,442 - Dshi_3108 0.89 +0.3
3,274,508 - +0.6
3,274,562 + +0.8
3,274,570 - +0.9
3,274,570 - -0.8
3,274,597 - -0.0
3,274,599 - +0.4
3,274,627 - -1.8
3,274,631 - -0.5
3,274,686 - -0.6
3,275,297 + Dshi_3109 0.39 +0.4
3,275,382 - Dshi_3109 0.44 -0.6

Or see this region's nucleotide sequence