Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3046

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3045 and Dshi_3046 are separated by 3 nucleotidesDshi_3046 and Dshi_3047 overlap by 4 nucleotides Dshi_3045: Dshi_3045 - glycosyl transferase family 2 (RefSeq), at 3,213,310 to 3,214,326 _3045 Dshi_3046: Dshi_3046 - Hydroxypyruvate reductase (RefSeq), at 3,214,330 to 3,215,577 _3046 Dshi_3047: Dshi_3047 - 6-phosphogluconate dehydrogenase NAD-binding (RefSeq), at 3,215,574 to 3,216,458 _3047 Position (kb) 3214 3215 3216Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3213.334 kb on - strandat 3213.455 kb on + strand, within Dshi_3045at 3213.456 kb on + strand, within Dshi_3045at 3213.505 kb on + strand, within Dshi_3045at 3213.545 kb on - strand, within Dshi_3045at 3213.571 kb on - strand, within Dshi_3045at 3213.911 kb on + strand, within Dshi_3045at 3213.911 kb on + strand, within Dshi_3045at 3214.076 kb on - strand, within Dshi_3045at 3214.087 kb on - strand, within Dshi_3045at 3214.186 kb on + strand, within Dshi_3045at 3214.347 kb on - strandat 3214.347 kb on - strandat 3214.450 kb on - strandat 3214.559 kb on - strand, within Dshi_3046at 3214.892 kb on + strand, within Dshi_3046at 3215.072 kb on - strand, within Dshi_3046at 3215.332 kb on - strand, within Dshi_3046at 3215.389 kb on + strand, within Dshi_3046at 3215.534 kb on + strandat 3215.615 kb on + strandat 3215.615 kb on + strandat 3215.623 kb on - strandat 3215.623 kb on - strandat 3215.707 kb on + strand, within Dshi_3047at 3215.707 kb on + strand, within Dshi_3047at 3215.715 kb on - strand, within Dshi_3047at 3215.981 kb on - strand, within Dshi_3047at 3215.988 kb on - strand, within Dshi_3047at 3216.020 kb on + strand, within Dshi_3047at 3216.181 kb on + strand, within Dshi_3047at 3216.311 kb on + strand, within Dshi_3047at 3216.366 kb on + strand, within Dshi_3047at 3216.428 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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3,213,334 - -4.3
3,213,455 + Dshi_3045 0.14 -2.0
3,213,456 + Dshi_3045 0.14 -0.0
3,213,505 + Dshi_3045 0.19 -1.6
3,213,545 - Dshi_3045 0.23 -4.5
3,213,571 - Dshi_3045 0.26 -0.6
3,213,911 + Dshi_3045 0.59 -4.0
3,213,911 + Dshi_3045 0.59 -2.7
3,214,076 - Dshi_3045 0.75 -3.5
3,214,087 - Dshi_3045 0.76 -4.5
3,214,186 + Dshi_3045 0.86 -3.8
3,214,347 - -1.1
3,214,347 - +1.5
3,214,450 - -2.6
3,214,559 - Dshi_3046 0.18 +1.0
3,214,892 + Dshi_3046 0.45 +0.2
3,215,072 - Dshi_3046 0.59 +1.6
3,215,332 - Dshi_3046 0.80 +0.2
3,215,389 + Dshi_3046 0.85 -0.6
3,215,534 + +1.1
3,215,615 + -1.3
3,215,615 + +0.6
3,215,623 - -0.5
3,215,623 - +0.7
3,215,707 + Dshi_3047 0.15 -0.1
3,215,707 + Dshi_3047 0.15 +0.9
3,215,715 - Dshi_3047 0.16 -3.0
3,215,981 - Dshi_3047 0.46 +0.7
3,215,988 - Dshi_3047 0.47 +1.4
3,216,020 + Dshi_3047 0.50 -0.2
3,216,181 + Dshi_3047 0.69 +0.2
3,216,311 + Dshi_3047 0.83 +1.3
3,216,366 + Dshi_3047 0.89 +1.6
3,216,428 + -0.3

Or see this region's nucleotide sequence