Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2938

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2936 and Dshi_2937 are separated by 0 nucleotidesDshi_2937 and Dshi_2938 are separated by 286 nucleotidesDshi_2938 and Dshi_2939 are separated by 456 nucleotides Dshi_2936: Dshi_2936 - ATP synthase F1, alpha subunit (RefSeq), at 3,092,718 to 3,094,256 _2936 Dshi_2937: Dshi_2937 - ATP synthase F1, delta subunit (RefSeq), at 3,094,257 to 3,094,817 _2937 Dshi_2938: Dshi_2938 - hypothetical protein (RefSeq), at 3,095,104 to 3,095,874 _2938 Dshi_2939: Dshi_2939 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 3,096,331 to 3,098,658 _2939 Position (kb) 3095 3096Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3094.965 kb on - strandat 3094.971 kb on - strandat 3095.090 kb on - strandat 3095.090 kb on - strandat 3095.173 kb on - strandat 3095.173 kb on - strandat 3095.329 kb on + strand, within Dshi_2938at 3095.482 kb on - strand, within Dshi_2938at 3095.529 kb on + strand, within Dshi_2938at 3095.537 kb on - strand, within Dshi_2938at 3095.601 kb on + strand, within Dshi_2938at 3095.719 kb on - strand, within Dshi_2938at 3095.732 kb on + strand, within Dshi_2938at 3095.755 kb on + strand, within Dshi_2938at 3095.797 kb on + strand, within Dshi_2938at 3095.797 kb on + strand, within Dshi_2938at 3095.805 kb on - strandat 3095.805 kb on - strandat 3095.845 kb on + strandat 3095.860 kb on - strandat 3095.865 kb on - strandat 3095.872 kb on + strandat 3095.878 kb on + strandat 3095.878 kb on + strandat 3095.879 kb on + strandat 3095.879 kb on + strandat 3095.886 kb on - strandat 3095.897 kb on + strandat 3095.902 kb on + strandat 3095.923 kb on + strandat 3095.924 kb on + strandat 3095.931 kb on - strandat 3095.931 kb on - strandat 3095.932 kb on - strandat 3095.944 kb on + strandat 3095.955 kb on + strandat 3095.963 kb on - strandat 3095.994 kb on + strandat 3096.001 kb on + strandat 3096.084 kb on + strandat 3096.084 kb on + strandat 3096.086 kb on + strandat 3096.134 kb on + strandat 3096.142 kb on - strandat 3096.207 kb on - strandat 3096.242 kb on - strandat 3096.269 kb on - strandat 3096.277 kb on - strandat 3096.334 kb on - strandat 3096.350 kb on + strandat 3096.350 kb on + strandat 3096.358 kb on - strandat 3096.462 kb on + strandat 3096.553 kb on - strandat 3096.695 kb on - strand, within Dshi_2939at 3096.794 kb on - strand, within Dshi_2939at 3096.841 kb on + strand, within Dshi_2939

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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3,094,965 - -0.5
3,094,971 - -2.2
3,095,090 - -1.3
3,095,090 - +0.0
3,095,173 - +1.6
3,095,173 - -0.0
3,095,329 + Dshi_2938 0.29 +1.5
3,095,482 - Dshi_2938 0.49 +2.6
3,095,529 + Dshi_2938 0.55 +1.0
3,095,537 - Dshi_2938 0.56 +3.1
3,095,601 + Dshi_2938 0.64 +1.6
3,095,719 - Dshi_2938 0.80 +0.7
3,095,732 + Dshi_2938 0.81 -0.0
3,095,755 + Dshi_2938 0.84 +2.1
3,095,797 + Dshi_2938 0.90 +1.1
3,095,797 + Dshi_2938 0.90 +0.6
3,095,805 - +1.7
3,095,805 - +2.5
3,095,845 + -1.3
3,095,860 - -0.0
3,095,865 - -0.2
3,095,872 + -0.2
3,095,878 + +1.1
3,095,878 + +0.4
3,095,879 + +1.2
3,095,879 + +1.0
3,095,886 - +1.4
3,095,897 + +0.9
3,095,902 + +1.3
3,095,923 + +1.4
3,095,924 + -0.8
3,095,931 - +1.7
3,095,931 - +2.4
3,095,932 - -2.0
3,095,944 + +0.9
3,095,955 + -1.3
3,095,963 - +0.8
3,095,994 + -2.3
3,096,001 + -2.3
3,096,084 + +2.2
3,096,084 + +0.9
3,096,086 + +0.6
3,096,134 + +1.3
3,096,142 - +0.3
3,096,207 - -0.9
3,096,242 - +2.0
3,096,269 - +0.7
3,096,277 - +0.2
3,096,334 - -2.0
3,096,350 + +2.3
3,096,350 + -0.6
3,096,358 - +1.7
3,096,462 + +1.7
3,096,553 - -1.1
3,096,695 - Dshi_2939 0.16 -0.3
3,096,794 - Dshi_2939 0.20 +2.5
3,096,841 + Dshi_2939 0.22 +1.4

Or see this region's nucleotide sequence