Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2658

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2656 and Dshi_2657 are separated by 93 nucleotidesDshi_2657 and Dshi_2658 are separated by 177 nucleotidesDshi_2658 and Dshi_2659 are separated by 48 nucleotides Dshi_2656: Dshi_2656 - sulfate adenylyltransferase (RefSeq), at 2,811,577 to 2,813,652 _2656 Dshi_2657: Dshi_2657 - hypothetical protein (RefSeq), at 2,813,746 to 2,814,336 _2657 Dshi_2658: Dshi_2658 - molybdopterin dehydrogenase FAD-binding (RefSeq), at 2,814,514 to 2,815,302 _2658 Dshi_2659: Dshi_2659 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 2,815,351 to 2,817,726 _2659 Position (kb) 2814 2815 2816Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2813.654 kb on - strandat 2813.880 kb on - strand, within Dshi_2657at 2813.880 kb on - strand, within Dshi_2657at 2813.965 kb on - strand, within Dshi_2657at 2814.022 kb on - strand, within Dshi_2657at 2814.050 kb on - strand, within Dshi_2657at 2814.086 kb on + strand, within Dshi_2657at 2814.103 kb on - strand, within Dshi_2657at 2814.149 kb on + strand, within Dshi_2657at 2814.151 kb on + strand, within Dshi_2657at 2814.157 kb on - strand, within Dshi_2657at 2814.377 kb on + strandat 2814.422 kb on - strandat 2814.423 kb on - strandat 2814.427 kb on - strandat 2814.428 kb on - strandat 2814.456 kb on - strandat 2814.520 kb on - strandat 2814.545 kb on + strandat 2814.550 kb on + strandat 2814.553 kb on - strandat 2814.926 kb on - strand, within Dshi_2658at 2814.954 kb on - strand, within Dshi_2658at 2815.109 kb on + strand, within Dshi_2658at 2815.121 kb on - strand, within Dshi_2658at 2815.322 kb on - strandat 2815.345 kb on - strandat 2815.365 kb on - strandat 2815.422 kb on + strandat 2815.500 kb on + strandat 2815.523 kb on - strandat 2815.550 kb on + strandat 2815.585 kb on + strandat 2815.612 kb on - strand, within Dshi_2659at 2815.671 kb on - strand, within Dshi_2659at 2815.759 kb on - strand, within Dshi_2659at 2815.799 kb on - strand, within Dshi_2659at 2815.853 kb on - strand, within Dshi_2659at 2816.207 kb on - strand, within Dshi_2659

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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2,813,654 - -3.3
2,813,880 - Dshi_2657 0.23 +2.1
2,813,880 - Dshi_2657 0.23 -1.1
2,813,965 - Dshi_2657 0.37 -0.6
2,814,022 - Dshi_2657 0.47 +0.2
2,814,050 - Dshi_2657 0.51 +2.0
2,814,086 + Dshi_2657 0.58 +0.2
2,814,103 - Dshi_2657 0.60 -1.3
2,814,149 + Dshi_2657 0.68 +0.5
2,814,151 + Dshi_2657 0.69 -0.2
2,814,157 - Dshi_2657 0.70 +0.6
2,814,377 + +0.8
2,814,422 - -2.0
2,814,423 - +0.3
2,814,427 - +0.7
2,814,428 - +0.6
2,814,456 - +0.0
2,814,520 - +0.0
2,814,545 + +0.5
2,814,550 + +0.6
2,814,553 - +2.0
2,814,926 - Dshi_2658 0.52 +0.6
2,814,954 - Dshi_2658 0.56 +1.6
2,815,109 + Dshi_2658 0.75 -1.2
2,815,121 - Dshi_2658 0.77 -2.3
2,815,322 - +0.6
2,815,345 - +2.0
2,815,365 - +2.8
2,815,422 + -2.4
2,815,500 + +1.4
2,815,523 - -3.8
2,815,550 + -0.0
2,815,585 + +0.4
2,815,612 - Dshi_2659 0.11 +1.0
2,815,671 - Dshi_2659 0.13 +0.5
2,815,759 - Dshi_2659 0.17 -1.6
2,815,799 - Dshi_2659 0.19 +1.5
2,815,853 - Dshi_2659 0.21 +0.5
2,816,207 - Dshi_2659 0.36 +1.2

Or see this region's nucleotide sequence